Home
last modified time | relevance | path

Searched refs:cdsstart (Results 1 – 3 of 3) sorted by relevance

/dports/biology/emboss/EMBOSS-6.6.0/ajax/ensembl/
H A Densqcsequence.c281 ajuint cdsstart, in ensQcsequenceNewIni() argument
317 qcs->CdsStart = cdsstart; in ensQcsequenceNewIni()
880 AjBool ensQcsequenceSetCdsStart(EnsPQcsequence qcs, ajuint cdsstart) in ensQcsequenceSetCdsStart() argument
885 qcs->CdsStart = cdsstart; in ensQcsequenceSetCdsStart()
1855 ajuint cdsstart = 0U; in qcsequenceadaptorFetchAllbyStatement() local
1917 cdsstart = 0; in qcsequenceadaptorFetchAllbyStatement()
1932 ajSqlcolumnToUint(sqlr, &cdsstart); in qcsequenceadaptorFetchAllbyStatement()
1950 cdsstart, in qcsequenceadaptorFetchAllbyStatement()
H A Densqcsequence.h150 ajuint cdsstart,
202 AjBool ensQcsequenceSetCdsStart(EnsPQcsequence qcs, ajuint cdsstart);
H A Denstranscript.c5572 ajuint cdsstart = 0U; in ensTranscriptFetchSequenceCodingStr() local
5604 cdsstart = ensTranscriptCalculateTranscriptCodingStart(transcript, in ensTranscriptFetchSequenceCodingStr()
5607 if (!cdsstart) in ensTranscriptFetchSequenceCodingStr()
5610 "Translation pair with an invalid cdsstart %u.\n", cdsstart); in ensTranscriptFetchSequenceCodingStr()
5633 ajStrAppendSubS(Psequence, sequence, cdsstart - 1, cdsend - 1); in ensTranscriptFetchSequenceCodingStr()
6514 ajuint cdsstart = 0U; in ensTranscriptMapperSliceTocoding() local
6589 cdsstart = ensMapperresultGetCoordinateStart(gcmr) in ensTranscriptMapperSliceTocoding()
6608 cdsstart = 1; in ensTranscriptMapperSliceTocoding()
6634 cdsstart, in ensTranscriptMapperSliceTocoding()