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/dports/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/pdb2pqr/propka30/Source/
H A Dpdb.py72 if newatom.chainID in atoms:
94 chainID = getChainID(line)
96 if chainID not in atoms:
434 chainID = None, argument
449 if chainID != None: self.chainID = chainID
464 chainID = None, argument
479 if chainID == None: chainID = self.chainID
494 chainID=chainID,
508 chainID = None, argument
523 if chainID == None: chainID = self.chainID
[all …]
/dports/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/pdb2pqr/pdb2pka/
H A DpKa_utility_functions_compat.py30 chainID=''
63 chainID=last_split[0]
65 chainID=''
81 chainID=''
83 chainID=cid
85 chainID=''
114 chainID=split_lastsplit[0]
116 chainID=''
211 chainID=''
213 chainID=residue[7]
[all …]
/dports/databases/mariadb105-client/mariadb-10.5.15/extra/wolfssl/wolfssl/certs/test-pathlen/
H A Dassemble-chains.sh22 chainID="$1"
32 echo "Updating $chainID-$icaNum-$pathLen.pem"
41 openssl x509 -in "$chainID-$icaNum-$pathLen.pem" -text > ca_tmp.pem
43 mv ca_tmp.pem "$chainID-$icaNum-$pathLen.pem"
45 echo "Updating $chainID-$icaNum-pathlen$pathLen.pem"
54 openssl x509 -in "$chainID-$icaNum-pathlen$pathLen.pem" -text > ca_tmp.pem
56 mv ca_tmp.pem "$chainID-$icaNum-pathlen$pathLen.pem"
72 chainID="$1"
75 echo "Updating $chainID-entity.pem"
85 openssl x509 -in "$chainID"-entity.pem -text > cert_tmp.pem
[all …]
/dports/databases/mariadb104-server/mariadb-10.4.24/extra/wolfssl/wolfssl/certs/test-pathlen/
H A Dassemble-chains.sh22 chainID="$1"
32 echo "Updating $chainID-$icaNum-$pathLen.pem"
41 openssl x509 -in "$chainID-$icaNum-$pathLen.pem" -text > ca_tmp.pem
43 mv ca_tmp.pem "$chainID-$icaNum-$pathLen.pem"
45 echo "Updating $chainID-$icaNum-pathlen$pathLen.pem"
54 openssl x509 -in "$chainID-$icaNum-pathlen$pathLen.pem" -text > ca_tmp.pem
56 mv ca_tmp.pem "$chainID-$icaNum-pathlen$pathLen.pem"
72 chainID="$1"
75 echo "Updating $chainID-entity.pem"
85 openssl x509 -in "$chainID"-entity.pem -text > cert_tmp.pem
[all …]
/dports/databases/mariadb105-server/mariadb-10.5.15/extra/wolfssl/wolfssl/certs/test-pathlen/
H A Dassemble-chains.sh22 chainID="$1"
32 echo "Updating $chainID-$icaNum-$pathLen.pem"
41 openssl x509 -in "$chainID-$icaNum-$pathLen.pem" -text > ca_tmp.pem
43 mv ca_tmp.pem "$chainID-$icaNum-$pathLen.pem"
45 echo "Updating $chainID-$icaNum-pathlen$pathLen.pem"
54 openssl x509 -in "$chainID-$icaNum-pathlen$pathLen.pem" -text > ca_tmp.pem
56 mv ca_tmp.pem "$chainID-$icaNum-pathlen$pathLen.pem"
72 chainID="$1"
75 echo "Updating $chainID-entity.pem"
85 openssl x509 -in "$chainID"-entity.pem -text > cert_tmp.pem
[all …]
/dports/databases/mariadb104-client/mariadb-10.4.24/extra/wolfssl/wolfssl/certs/test-pathlen/
H A Dassemble-chains.sh22 chainID="$1"
32 echo "Updating $chainID-$icaNum-$pathLen.pem"
41 openssl x509 -in "$chainID-$icaNum-$pathLen.pem" -text > ca_tmp.pem
43 mv ca_tmp.pem "$chainID-$icaNum-$pathLen.pem"
45 echo "Updating $chainID-$icaNum-pathlen$pathLen.pem"
54 openssl x509 -in "$chainID-$icaNum-pathlen$pathLen.pem" -text > ca_tmp.pem
56 mv ca_tmp.pem "$chainID-$icaNum-pathlen$pathLen.pem"
72 chainID="$1"
75 echo "Updating $chainID-entity.pem"
85 openssl x509 -in "$chainID"-entity.pem -text > cert_tmp.pem
[all …]
/dports/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/pdb2pqr/src/
H A Dprotein.py96 record.chainID = string.ascii_uppercase[count]
98 chainID = record.chainID
106 if chainID not in chainDict:
107 myChain = Chain(chainID)
108 chainDict[chainID] = myChain
112 chainID != previousAtom.chainID:
122 chainDict[previousAtom.chainID].addResidue(myResidue)
138 chainDict[previousAtom.chainID].addResidue(myResidue)
209 currentchainID = atom.chainID
210 elif atom.chainID != currentchainID:
[all …]
/dports/science/jmol/jmol-14.32.7/src/org/jmol/modelset/
H A DChain.java42 public int chainID; field in Chain
63 Chain(Model model, int chainID, int chainNo) { in Chain() argument
65 this.chainID = chainID; in Chain()
75 …return (chainID == 0 ? "" : chainID < 256 ? "" + (char) chainID : (String) model.ms.vwr.getChainID… in getIDStr()
/dports/science/py-moltemplate/moltemplate-2.19.14/moltemplate/
H A Dpdbsort.py40 self.chainID = setChainID
55 …return (self.chainID, self.seqNum, self.iCode, self.atomID) <= (other.chainID, other.seqNum, other…
58 …return (self.chainID, self.seqNum, self.iCode, self.atomID) < (other.chainID, other.seqNum, other.…
63 …return (self.chainID, self.seqNum, self.iCode, self.atomID) == (other.chainID, other.seqNum, other…
87 i += ord(self.chainID)
125 chainID = line[21:22]
128 atomdescr = AtomDescr(chainID, int(seqNumStr), iCode, int(atomID))
/dports/sysutils/istio/istio-1.6.7/vendor/github.com/docker/docker/vendor/github.com/containerd/containerd/rootfs/
H A Dapply.go55 chainID := identity.ChainID(chain)
60 _, err := sn.Stat(ctx, chainID.String())
63 return "", errors.Wrapf(err, "failed to stat snapshot %s", chainID)
71 return chainID, nil
79 chainID = identity.ChainID(append(chain, layer.Diff.Digest)).String()
82 if _, err := sn.Stat(ctx, chainID); err != nil {
84 return false, errors.Wrapf(err, "failed to stat snapshot %s", chainID)
101 chainID = identity.ChainID(chain)
110 key = fmt.Sprintf("extract-%s %s", uniquePart(), chainID)
157 if err = sn.Commit(ctx, chainID.String(), key, opts...); err != nil {
/dports/sysutils/docker/docker-ce-18.09.5/components/engine/vendor/github.com/containerd/containerd/rootfs/
H A Dapply.go55 chainID := identity.ChainID(chain)
60 _, err := sn.Stat(ctx, chainID.String())
63 return "", errors.Wrapf(err, "failed to stat snapshot %s", chainID)
71 return chainID, nil
79 chainID = identity.ChainID(append(chain, layer.Diff.Digest)).String()
82 if _, err := sn.Stat(ctx, chainID); err != nil {
84 return false, errors.Wrapf(err, "failed to stat snapshot %s", chainID)
101 chainID = identity.ChainID(chain)
110 key = fmt.Sprintf("extract-%s %s", uniquePart(), chainID)
157 if err = sn.Commit(ctx, chainID.String(), key, opts...); err != nil {
/dports/databases/cayley/cayley-0.7.5-2-gcf576ba/vendor/github.com/docker/docker/vendor/github.com/containerd/containerd/rootfs/
H A Dapply.go55 chainID := identity.ChainID(chain)
60 _, err := sn.Stat(ctx, chainID.String())
63 return "", errors.Wrapf(err, "failed to stat snapshot %s", chainID)
71 return chainID, nil
79 chainID = identity.ChainID(append(chain, layer.Diff.Digest)).String()
82 if _, err := sn.Stat(ctx, chainID); err != nil {
84 return false, errors.Wrapf(err, "failed to stat snapshot %s", chainID)
101 chainID = identity.ChainID(chain)
110 key = fmt.Sprintf("extract-%s %s", uniquePart(), chainID)
157 if err = sn.Commit(ctx, chainID.String(), key, opts...); err != nil {
/dports/databases/timescaledb-backup/timescaledb-backup-0.1.1/vendor/github.com/docker/docker/vendor/github.com/containerd/containerd/rootfs/
H A Dapply.go55 chainID := identity.ChainID(chain)
60 _, err := sn.Stat(ctx, chainID.String())
63 return "", errors.Wrapf(err, "failed to stat snapshot %s", chainID)
71 return chainID, nil
79 chainID = identity.ChainID(append(chain, layer.Diff.Digest)).String()
82 if _, err := sn.Stat(ctx, chainID); err != nil {
84 return false, errors.Wrapf(err, "failed to stat snapshot %s", chainID)
101 chainID = identity.ChainID(chain)
110 key = fmt.Sprintf("extract-%s %s", uniquePart(), chainID)
157 if err = sn.Commit(ctx, chainID.String(), key, opts...); err != nil {
/dports/net-p2p/go-ethereum/go-ethereum-1.10.14/vendor/github.com/docker/docker/vendor/github.com/containerd/containerd/rootfs/
H A Dapply.go55 chainID := identity.ChainID(chain)
60 _, err := sn.Stat(ctx, chainID.String())
63 return "", errors.Wrapf(err, "failed to stat snapshot %s", chainID)
71 return chainID, nil
79 chainID = identity.ChainID(append(chain, layer.Diff.Digest)).String()
82 if _, err := sn.Stat(ctx, chainID); err != nil {
84 return false, errors.Wrapf(err, "failed to stat snapshot %s", chainID)
101 chainID = identity.ChainID(chain)
110 key = fmt.Sprintf("extract-%s %s", uniquePart(), chainID)
157 if err = sn.Commit(ctx, chainID.String(), key, opts...); err != nil {
/dports/sysutils/docker/docker-ce-18.09.5/components/cli/vendor/github.com/containerd/containerd/rootfs/
H A Dapply.go55 chainID := identity.ChainID(chain)
60 _, err := sn.Stat(ctx, chainID.String())
63 return "", errors.Wrapf(err, "failed to stat snapshot %s", chainID)
71 return chainID, nil
79 chainID = identity.ChainID(append(chain, layer.Diff.Digest)).String()
82 if _, err := sn.Stat(ctx, chainID); err != nil {
84 return false, errors.Wrapf(err, "failed to stat snapshot %s", chainID)
101 chainID = identity.ChainID(chain)
110 key = fmt.Sprintf("extract-%s %s", uniquePart(), chainID)
157 if err = sn.Commit(ctx, chainID.String(), key, opts...); err != nil {
/dports/science/mmdb2/mmdb2-2.0.20/mmdb2/
H A Dmmdb_chain.cpp102 if (!strcmp(PContainerChain(Container[i])->chainID,chainID)) { in MoveByChainID()
117 chainID[0] = char(0); in MakeStreamFunctions()
181 if (chain->chainID[0]) S[12] = chain->chainID[0]; in PDBASCIIDump()
452 if (chain->chainID[0]) S[16] = chain->chainID[0]; in PDBASCIIDump()
649 if (chain) strcpy ( chainID,chain->chainID ); in SetChain()
817 if (chainID[0]==char(1)) strcpy ( chainID,chID ); in GetCIF()
938 if (chain->chainID[0]) S[16] = chain->chainID[0]; in PDBASCIIDump()
1148 if (chain->chainID[0]) S[12] = chain->chainID[0]; in PDBASCIIDump()
2123 strcpy ( chainID ,chain->chainID ); in CopyAnnotations()
2140 strcpy ( chainID ,chain->chainID ); in _copy()
[all …]
/dports/biology/garlic/garlic-1.6/
H A Dlist_exposed_polar.c66 char chainID; in ListExposedPolarResidues_() local
123 chainID = curr_atomSP->raw_atomS.chainID; in ListExposedPolarResidues_()
141 if (curr_exposedSP->chainID != chainID) continue; in ListExposedPolarResidues_()
167 curr_exposedSP->chainID = chainID; in ListExposedPolarResidues_()
/dports/devel/gitlab-runner/gitlab-runner-8925d9a06fd8e452e2161a768462652a2a13111f/vendor/github.com/containerd/containerd/containerd-1.4.3/rootfs/
H A Dapply.go63 chainID := identity.ChainID(chain)
68 _, err := sn.Stat(ctx, chainID.String())
71 return "", errors.Wrapf(err, "failed to stat snapshot %s", chainID)
79 return chainID, nil
94 chainID = identity.ChainID(append(chain, layer.Diff.Digest)).String()
97 if _, err := sn.Stat(ctx, chainID); err != nil {
99 return false, errors.Wrapf(err, "failed to stat snapshot %s", chainID)
117 chainID = identity.ChainID(chain)
126 key = fmt.Sprintf("extract-%s %s", uniquePart(), chainID)
173 if err = sn.Commit(ctx, chainID.String(), key, opts...); err != nil {
/dports/sysutils/istio/istio-1.6.7/vendor/github.com/containerd/containerd/rootfs/
H A Dapply.go63 chainID := identity.ChainID(chain)
68 _, err := sn.Stat(ctx, chainID.String())
71 return "", errors.Wrapf(err, "failed to stat snapshot %s", chainID)
79 return chainID, nil
94 chainID = identity.ChainID(append(chain, layer.Diff.Digest)).String()
97 if _, err := sn.Stat(ctx, chainID); err != nil {
99 return false, errors.Wrapf(err, "failed to stat snapshot %s", chainID)
117 chainID = identity.ChainID(chain)
126 key = fmt.Sprintf("extract-%s %s", uniquePart(), chainID)
173 if err = sn.Commit(ctx, chainID.String(), key, opts...); err != nil {
/dports/net-im/dendrite/dendrite-0.5.1/vendor/github.com/docker/docker/vendor/github.com/containerd/containerd/rootfs/
H A Dapply.go63 chainID := identity.ChainID(chain)
68 _, err := sn.Stat(ctx, chainID.String())
71 return "", errors.Wrapf(err, "failed to stat snapshot %s", chainID)
79 return chainID, nil
94 chainID = identity.ChainID(append(chain, layer.Diff.Digest)).String()
97 if _, err := sn.Stat(ctx, chainID); err != nil {
99 return false, errors.Wrapf(err, "failed to stat snapshot %s", chainID)
117 chainID = identity.ChainID(chain)
126 key = fmt.Sprintf("extract-%s %s", uniquePart(), chainID)
173 if err = sn.Commit(ctx, chainID.String(), key, opts...); err != nil {
/dports/net-im/dendrite/dendrite-0.5.1/vendor/github.com/containerd/containerd/rootfs/
H A Dapply.go63 chainID := identity.ChainID(chain)
68 _, err := sn.Stat(ctx, chainID.String())
71 return "", errors.Wrapf(err, "failed to stat snapshot %s", chainID)
79 return chainID, nil
94 chainID = identity.ChainID(append(chain, layer.Diff.Digest)).String()
97 if _, err := sn.Stat(ctx, chainID); err != nil {
99 return false, errors.Wrapf(err, "failed to stat snapshot %s", chainID)
117 chainID = identity.ChainID(chain)
126 key = fmt.Sprintf(snapshots.UnpackKeyFormat, uniquePart(), chainID)
173 if err = sn.Commit(ctx, chainID.String(), key, opts...); err != nil {
/dports/net/concourse-fly/concourse-6.7.1/vendor/github.com/containerd/containerd/rootfs/
H A Dapply.go63 chainID := identity.ChainID(chain)
68 _, err := sn.Stat(ctx, chainID.String())
71 return "", errors.Wrapf(err, "failed to stat snapshot %s", chainID)
79 return chainID, nil
94 chainID = identity.ChainID(append(chain, layer.Diff.Digest)).String()
97 if _, err := sn.Stat(ctx, chainID); err != nil {
99 return false, errors.Wrapf(err, "failed to stat snapshot %s", chainID)
117 chainID = identity.ChainID(chain)
126 key = fmt.Sprintf("extract-%s %s", uniquePart(), chainID)
173 if err = sn.Commit(ctx, chainID.String(), key, opts...); err != nil {
/dports/net-mgmt/promscale/promscale-0.6.2/vendor/github.com/docker/docker/vendor/github.com/containerd/containerd/rootfs/
H A Dapply.go63 chainID := identity.ChainID(chain)
68 _, err := sn.Stat(ctx, chainID.String())
71 return "", errors.Wrapf(err, "failed to stat snapshot %s", chainID)
79 return chainID, nil
94 chainID = identity.ChainID(append(chain, layer.Diff.Digest)).String()
97 if _, err := sn.Stat(ctx, chainID); err != nil {
99 return false, errors.Wrapf(err, "failed to stat snapshot %s", chainID)
117 chainID = identity.ChainID(chain)
126 key = fmt.Sprintf("extract-%s %s", uniquePart(), chainID)
173 if err = sn.Commit(ctx, chainID.String(), key, opts...); err != nil {
/dports/net-mgmt/promscale/promscale-0.6.2/vendor/github.com/containerd/containerd/rootfs/
H A Dapply.go63 chainID := identity.ChainID(chain)
68 _, err := sn.Stat(ctx, chainID.String())
71 return "", errors.Wrapf(err, "failed to stat snapshot %s", chainID)
79 return chainID, nil
94 chainID = identity.ChainID(append(chain, layer.Diff.Digest)).String()
97 if _, err := sn.Stat(ctx, chainID); err != nil {
99 return false, errors.Wrapf(err, "failed to stat snapshot %s", chainID)
117 chainID = identity.ChainID(chain)
126 key = fmt.Sprintf(snapshots.UnpackKeyFormat, uniquePart(), chainID)
173 if err = sn.Commit(ctx, chainID.String(), key, opts...); err != nil {
/dports/net-mgmt/promscale/promscale-0.6.2/vendor/github.com/Microsoft/hcsshim/test/vendor/github.com/containerd/containerd/rootfs/
H A Dapply.go63 chainID := identity.ChainID(chain)
68 _, err := sn.Stat(ctx, chainID.String())
71 return "", errors.Wrapf(err, "failed to stat snapshot %s", chainID)
79 return chainID, nil
94 chainID = identity.ChainID(append(chain, layer.Diff.Digest)).String()
97 if _, err := sn.Stat(ctx, chainID); err != nil {
99 return false, errors.Wrapf(err, "failed to stat snapshot %s", chainID)
117 chainID = identity.ChainID(chain)
126 key = fmt.Sprintf(snapshots.UnpackKeyFormat, uniquePart(), chainID)
173 if err = sn.Commit(ctx, chainID.String(), key, opts...); err != nil {

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