check_region_beg (reference) in projects: dports

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Searched refs:check_region_beg (Results 1 – 4 of 4) sorted by relevance

/dports/biology/bio-mocha/bcftools-1.14/
H A D	csq.c	1549 … check_region_beg:1, // do/don't check for splices at this end, eg. in the first or last exon member 1771 …if ( splice->ref_end < ex_beg \|\| (splice->ref_end == ex_beg && !splice->check_region_beg) ) // … in splice_csq_ins() 1788 if ( !splice->check_region_beg ) return SPLICE_OUTSIDE; in splice_csq_ins() 1813 if ( splice->check_region_beg ) splice->csq \|= CSQ_SPLICE_REGION; in splice_csq_ins() 1949 if ( splice->check_region_beg ) in splice_csq_del() 2050 if ( splice->check_region_beg ) splice->csq \|= CSQ_SPLICE_REGION; in splice_csq_del() 2094 if ( splice->check_region_beg ) in splice_csq_mnp() 2160 if ( splice->check_region_beg ) splice->csq \|= CSQ_SPLICE_REGION; in splice_csq_mnp() 2241 if ( child->icds!=0 ) splice.check_region_beg = 1; in hap_init() 3902 splice.check_region_beg = splice.tr->beg==exon->beg ? 0 : 1; in test_splice() [all …]
/dports/biology/bcftools/bcftools-1.14/
H A D	csq.c	1549 … check_region_beg:1, // do/don't check for splices at this end, eg. in the first or last exon member 1771 …if ( splice->ref_end < ex_beg \|\| (splice->ref_end == ex_beg && !splice->check_region_beg) ) // … in splice_csq_ins() 1788 if ( !splice->check_region_beg ) return SPLICE_OUTSIDE; in splice_csq_ins() 1813 if ( splice->check_region_beg ) splice->csq \|= CSQ_SPLICE_REGION; in splice_csq_ins() 1949 if ( splice->check_region_beg ) in splice_csq_del() 2050 if ( splice->check_region_beg ) splice->csq \|= CSQ_SPLICE_REGION; in splice_csq_del() 2094 if ( splice->check_region_beg ) in splice_csq_mnp() 2160 if ( splice->check_region_beg ) splice->csq \|= CSQ_SPLICE_REGION; in splice_csq_mnp() 2241 if ( child->icds!=0 ) splice.check_region_beg = 1; in hap_init() 3902 splice.check_region_beg = splice.tr->beg==exon->beg ? 0 : 1; in test_splice() [all …]
/dports/biology/py-pysam/pysam-0.18.0/bcftools/
H A D	csq.c	1549 … check_region_beg:1, // do/don't check for splices at this end, eg. in the first or last exon member 1771 …if ( splice->ref_end < ex_beg \|\| (splice->ref_end == ex_beg && !splice->check_region_beg) ) // … in splice_csq_ins() 1788 if ( !splice->check_region_beg ) return SPLICE_OUTSIDE; in splice_csq_ins() 1813 if ( splice->check_region_beg ) splice->csq \|= CSQ_SPLICE_REGION; in splice_csq_ins() 1949 if ( splice->check_region_beg ) in splice_csq_del() 2050 if ( splice->check_region_beg ) splice->csq \|= CSQ_SPLICE_REGION; in splice_csq_del() 2094 if ( splice->check_region_beg ) in splice_csq_mnp() 2160 if ( splice->check_region_beg ) splice->csq \|= CSQ_SPLICE_REGION; in splice_csq_mnp() 2241 if ( child->icds!=0 ) splice.check_region_beg = 1; in hap_init() 3902 splice.check_region_beg = splice.tr->beg==exon->beg ? 0 : 1; in test_splice() [all …]
H A D	csq.c.pysam.c	1551 … check_region_beg:1, // do/don't check for splices at this end, eg. in the first or last exon member 1773 …if ( splice->ref_end < ex_beg \|\| (splice->ref_end == ex_beg && !splice->check_region_beg) ) // … in splice_csq_ins() 1790 if ( !splice->check_region_beg ) return SPLICE_OUTSIDE; in splice_csq_ins() 1815 if ( splice->check_region_beg ) splice->csq \|= CSQ_SPLICE_REGION; in splice_csq_ins() 1951 if ( splice->check_region_beg ) in splice_csq_del() 2052 if ( splice->check_region_beg ) splice->csq \|= CSQ_SPLICE_REGION; in splice_csq_del() 2096 if ( splice->check_region_beg ) in splice_csq_mnp() 2162 if ( splice->check_region_beg ) splice->csq \|= CSQ_SPLICE_REGION; in splice_csq_mnp() 2243 if ( child->icds!=0 ) splice.check_region_beg = 1; in hap_init() 3904 splice.check_region_beg = splice.tr->beg==exon->beg ? 0 : 1; in test_splice() [all …]