| /dports/biology/plink/plink-ng-79b2df8c/1.9/ |
| H A D | plink_homozyg.c | 503 …wptr = width_force(4, wptr_chr, chrom_name_write(chrom_info_ptr, get_variant_chrom(chrom_info_ptr,… in write_main_roh_reports()
605 wptr_chr = width_force(4, g_textbuf, chrom_name_write(chrom_info_ptr, uii, g_textbuf)); in write_main_roh_reports()
2297 wptr = width_force(4, wptr, chrom_name_write(chrom_info_ptr, chrom_start, wptr)); in roh_pool()
2365 wptr = width_force(4, wptr, chrom_name_write(chrom_info_ptr, chrom_start, wptr)); in roh_pool()
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| H A D | plink_misc.c | 2512 col_2_start = width_force(4, writebuf, chrom_name_write(chrom_info_ptr, chrom_idx, writebuf)); in write_stratified_freqs()
2760 pzwritep = width_force(4, pzwritep, chrom_name_write(chrom_info_ptr, chrom_idx, pzwritep)); in write_cc_freqs()
2930 pzwritep = chrom_name_write(chrom_info_ptr, chrom_idx, pzwritep); in write_freqs()
2942 pzwritep = width_force(4, pzwritep, chrom_name_write(chrom_info_ptr, chrom_idx, pzwritep)); in write_freqs()
2958 pzwritep = width_force(4, pzwritep, chrom_name_write(chrom_info_ptr, chrom_idx, pzwritep)); in write_freqs()
3487 …wptr_start = chrom_name_write(chrom_info_ptr, chrom_info_ptr->chrom_file_order[chrom_fo_idx], g_te… in list_duplicate_vars()
4082 wptr_start = chrom_name_write(chrom_info_ptr, chrom_idx, g_textbuf); in fst_report()
6252 wptr = width_force(4, wptr, chrom_name_write(chrom_info_ptr, cur_chrom, wptr)); in meta_analysis()
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| H A D | plink_filter.c | 2650 cptr = width_force(4, g_textbuf, chrom_name_write(chrom_info_ptr, chrom_idx, g_textbuf)); in write_missingness_reports()
2950 …cptr0 = width_force(4, writebuf, chrom_name_write(chrom_info_ptr, chrom_info_ptr->chrom_file_order… in hardy_report()
2967 …cptr0 = width_force(4, writebuf, chrom_name_write(chrom_info_ptr, chrom_info_ptr->chrom_file_order… in hardy_report()
3007 …cptr0 = width_force(4, writebuf, chrom_name_write(chrom_info_ptr, chrom_info_ptr->chrom_file_order… in hardy_report()
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| H A D | plink_data.c | 2372 buf_start = chrom_name_write(chrom_info_ptr, chrom_idx, g_textbuf); in write_map_or_bim()
2846 bufptr0 = chrom_name_write(chrom_info_ptr, cur_chrom, g_textbuf); in load_sort_and_write_map()
11737 wbufptr = chrom_name_write(chrom_info_ptr, chrom_idx, outname_end2); in recode_beagle_new_chrom()
12555 cptr = chrom_name_write(chrom_info_ptr, chrom_idx, g_textbuf); in recode()
12570 cptr = chrom_name_write(chrom_info_ptr, chrom_idx, g_textbuf); in recode()
12654 cptr = chrom_name_write(chrom_info_ptr, chrom_idx, g_textbuf); in recode()
12669 cptr = chrom_name_write(chrom_info_ptr, chrom_idx, g_textbuf); in recode()
13022 pzwritep = chrom_name_write(chrom_info_ptr, chrom_idx, pzwritep); in recode()
13361 wbufptr = chrom_name_write(chrom_info_ptr, chrom_idx, wbufptr); in recode()
13959 wbufptr = chrom_name_write(chrom_info_ptr, chrom_idx, wbufptr); in recode()
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| H A D | plink_ld.c | 1678 wptr_start = width_force(6, textbuf, chrom_name_write(chrom_info_ptr, chrom_idx, textbuf)); in flipscan()
2687 sptr2 = width_force(6, g_textbuf, chrom_name_write(chrom_info_ptr, chrom_idx1, g_textbuf)); in ld_regular_emitn()
2697 sptr2 = width_force(6, sptr2, chrom_name_write(chrom_info_ptr, chrom_idx1, sptr2)); in ld_regular_emitn()
2722 sptr_cur = width_force(6, sptr_cur, chrom_name_write(chrom_info_ptr, chrom_idx2, sptr_cur)); in ld_regular_emitn()
7577 wptr_start = width_force(4, g_textbuf, chrom_name_write(chrom_info_ptr, chrom_idx, g_textbuf)); in haploview_blocks()
8772 … wptr_start = width_force(4, g_textbuf, chrom_name_write(chrom_info_ptr, chrom_idx, g_textbuf)); in epistasis_linear_regression()
8780 wptr_start2 = width_force(4, wptr_start, chrom_name_write(chrom_info_ptr, chrom_idx2, wptr_start)); in epistasis_linear_regression()
9248 … wptr_start = width_force(4, g_textbuf, chrom_name_write(chrom_info_ptr, chrom_idx, g_textbuf)); in epistasis_logistic_regression()
9256 wptr_start2 = width_force(4, wptr_start, chrom_name_write(chrom_info_ptr, chrom_idx2, wptr_start)); in epistasis_logistic_regression()
10301 wptr_start = width_force(4, g_textbuf, chrom_name_write(chrom_info_ptr, chrom_idx, g_textbuf)); in epistasis_report()
[all …]
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| H A D | plink_cnv.c | 459 char* wptr = chrom_name_write(chrom_info_ptr, chrom_idx, g_textbuf); in cnv_make_map_write()
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| H A D | plink_family.c | 1818 wptr_start = width_force(4, textbuf, chrom_name_write(chrom_info_ptr, chrom_idx, textbuf)); in tdt_poo()
2258 wptr_start = width_force(4, textbuf, chrom_name_write(chrom_info_ptr, chrom_idx, textbuf)); in tdt()
4740 …wptr = width_force(4, textbuf, chrom_name_write(chrom_info_ptr, get_variant_chrom(chrom_info_ptr, … in dfam()
4879 wptr_start = width_force(4, g_textbuf, chrom_name_write(chrom_info_ptr, uii, g_textbuf)); in dfam()
6133 char* chrom_name_end = chrom_name_write(chrom_info_ptr, chrom_idx, chrom_buf); in make_pseudocontrols()
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| H A D | plink_lasso.c | 1223 wptr_start = chrom_name_write(chrom_info_ptr, uii, g_textbuf); in lasso()
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| H A D | plink_set.c | 1749 bufptr = chrom_name_write(chrom_info_ptr, chrom_idx, &(g_textbuf[1])); in write_set()
3645 bufptr = chrom_name_write(chrom_info_ptr, chrom_idx, bufptr); in gene_report()
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| H A D | plink_assoc.c | 477 …bufptr = width_force(4, g_textbuf, chrom_name_write(chrom_info_ptr, get_variant_chrom(chrom_info_p… in multcomp()
7692 wptr_start = width_force(4, g_textbuf, chrom_name_write(chrom_info_ptr, uii, g_textbuf)); in model_assoc()
9025 wptr_start = width_force(4, g_textbuf, chrom_name_write(chrom_info_ptr, uii, g_textbuf)); in qassoc()
9425 …wptr_start = width_force(4, g_textbuf, chrom_name_write(chrom_info_ptr, chrom_info_ptr->chrom_file… in gxe_assoc()
10176 wptr_start = width_force(4, g_textbuf, chrom_name_write(chrom_info_ptr, uii, g_textbuf)); in testmiss()
10691 wptr_start = width_force(4, g_textbuf, chrom_name_write(chrom_info_ptr, uii, g_textbuf)); in testmiss()
10948 *chrom_name_pp = chrom_name_write(chrom_info_ptr, chrom_idx, chrom_name_buf); in cluster_assoc_load_one()
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| H A D | plink_glm.c | 5033 wptr_start = width_force(4, writebuf, chrom_name_write(chrom_info_ptr, uii, writebuf)); in glm_linear_assoc()
5536 wptr_start = width_force(4, g_textbuf, chrom_name_write(chrom_info_ptr, uii, g_textbuf)); in glm_linear_assoc()
6512 wptr_start = width_force(4, writebuf, chrom_name_write(chrom_info_ptr, uii, writebuf)); in glm_logistic_assoc()
6972 wptr_start = width_force(4, g_textbuf, chrom_name_write(chrom_info_ptr, uii, g_textbuf)); in glm_logistic_assoc()
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| H A D | plink_dosage.c | 1967 …pzwritep = width_force(4, pzwritep, chrom_name_write(chrom_info_ptr, get_variant_chrom(chrom_info_… in plink1_dosage()
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| H A D | plink_common.h | 2257 char* chrom_name_write(const Chrom_info* chrom_info_ptr, uint32_t chrom_idx, char* buf);
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| H A D | plink_calc.c | 7209 wptr_start = chrom_name_write(chrom_info_ptr, chrom_idx, g_textbuf); in calc_pca()
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| H A D | plink_common.c | 4602 char* chrom_name_write(const Chrom_info* chrom_info_ptr, uint32_t chrom_idx, char* buf) { in chrom_name_write() function
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