Searched refs:chromo_ch (Results 1 – 2 of 2) sorted by relevance
1941 char chromo_ch = gvindex_get(index, begin_position + j); in dynamic_align() local1942 char is_matched_ij = (chromo_ch == read[i])?DPALIGN_MATCH_SCORE:DPALIGN_MISMATCH_PENALTY; in dynamic_align()1954 SUBREADprintf("%c%c\t", chromo_ch, read[i]); in dynamic_align()
4660 char chromo_ch = gvindex_get(current_value_index, begin_position + i); in core_dynamic_align() local4661 …char is_matched_ij = (chromo_ch == read[j])?CORE_DPALIGN_MATCH_SCORE:CORE_DPALIGN_MISMATCH_PENALTY; in core_dynamic_align()4681 table_mask[i][j]= (chromo_ch == read[j])?INDEL_MASK_BY_MATCH:INDEL_MASK_BY_MISMATCH; in core_dynamic_align()4686 table_mask[i][j]= (chromo_ch == read[j])?INDEL_MASK_BY_MATCH:INDEL_MASK_BY_MISMATCH; in core_dynamic_align()4701 SUBREADprintf("%c%c\t", chromo_ch, read[j]); in core_dynamic_align()