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Searched refs:chromosome_t (Results 1 – 8 of 8) sorted by relevance

/dports/biology/subread/subread-2.0.2-source/src/
H A DremoveDupReads.c69 int parse_base_blocks(char * temp_prefix, chromosome_t * chromosomes, int threshold, int all_thread… in parse_base_blocks()
148 int parse_base_blocks_maybe_thread(char * temp_location, chromosome_t * chromosomes, int threshold,… in parse_base_blocks_maybe_thread()
230 chromosome_t * known_chromosomes; in repeated_read_removal()
254 known_chromosomes = (chromosome_t *) SUBREAD_malloc(sizeof(chromosome_t) * XOFFSET_TABLE_SIZE); in repeated_read_removal()
H A Dinput-files.h268 …r * temp_file_prefix, unsigned int * real_read_count, int * block_no, chromosome_t * known_chromos…
270 int get_known_chromosomes(char * in_SAM_file, chromosome_t * known_chromosomes);
285 int get_read_block(char *chro, unsigned int pos, char *temp_file_suffix, chromosome_t *known_chromo…
H A DSNPCalling.c999 …ch(FILE *in_fp, FILE * out_fp, char * chro_name , char * temp_prefix, chromosome_t * chromosomes ,… in run_chromosome_search()
1122 int parse_read_lists(char * in_FASTA_file, FILE * out_fp, char * temp_prefix, chromosome_t * chromo… in parse_read_lists()
1173 chromosome_t * chromosomes;
1191 …hreads(char * in_FASTA_file, char * out_BED_file, char * temp_prefix, chromosome_t * chromosomes, … in parse_read_lists_maybe_threads()
1379 chromosome_t * known_chromosomes; in SNP_calling()
1396 known_chromosomes = (chromosome_t *) SUBREAD_malloc(sizeof(chromosome_t) * XOFFSET_TABLE_SIZE); in SNP_calling()
H A Dsubread.h610 } chromosome_t; typedef
H A Dinput-files.c1487 int get_read_block(char *chro, unsigned int pos, char *temp_file_suffix, chromosome_t *known_chromo… in get_read_block()
1593 int get_known_chromosomes(char * in_SAM_file, chromosome_t * known_chromosomes) in get_known_chromosomes()
1757 void break_VCF_file(char * vcf_file, HashTable * fp_table, char * temp_file_prefix, chromosome_t* k… in break_VCF_file()
1835 … temp_file_prefix, unsigned int * real_read_count, int * block_count, chromosome_t * known_chromos… in break_SAM_file()
/dports/games/pioneers/pioneers-15.6/client/ai/
H A Dgenetic_core.h63 struct chromosome_t { struct
74 const struct chromosome_t *chromosome, argument
H A Dgenetic.c33 struct chromosome_t thisChromosome = (struct chromosome_t) {
81 static Edge *best_road_spot(const struct chromosome_t *myChromosome,
89 const struct chromosome_t *myChromosome,
95 void updateTradingMatrix(const struct chromosome_t *myChromosome,
246 const struct chromosome_t *myChromosome, in should_buy()
596 const struct chromosome_t *myChromosome, in genetic_score_hex()
694 const struct chromosome_t *myChromosome, in genetic_score_node()
750 const struct chromosome_t *myChromosome, in best_settlement_spot()
865 const struct chromosome_t *myChromosome, in traverse_out()
1198 const struct chromosome_t *myChromosome, in resource_desire()
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H A Dgenetic_core.c183 const struct chromosome_t *chromosome, in resourcesIncrementValue()