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/dports/biology/bcftools/bcftools-1.14/
H A Dhclust.c73 if ( clust->nrmme >= clust->ndat*2 ) error("hclust fixme: %d vs %d\n",clust->nrmme,clust->ndat); in append_node()
74 clust->rmme[clust->nrmme++] = node; in append_node()
80 if ( node==clust->first ) clust->first = node->next; in remove_node()
81 if ( node==clust->last ) clust->last = node->prev; in remove_node()
135 for (i=0; i<clust->ndat; i++) append_node(clust,i); in hclust_init()
241 hts_expand(char*,clust->ndbg,clust->mdbg,clust->dbg); in hclust_explain()
242 clust->dbg[clust->ndbg-1] = beg; in hclust_explain()
277 clust->memb = (int*) realloc(clust->memb,sizeof(int)*clust->nmemb); in append_cluster()
278 clust->memb[clust->nmemb-1] = node->id; in append_cluster()
313 node_t **dat = clust->rmme + clust->ndat; in hclust_set_threshold()
[all …]
H A Dhclust.h54 void hclust_destroy(hclust_t *clust);
64 cluster_t *hclust_create_list(hclust_t *clust, float min_inter_dist, float *max_intra_dist, int *nc…
65 void hclust_destroy_list(cluster_t *clust, int nclust);
72 char **hclust_explain(hclust_t *clust, int *nlines);
74 char *hclust_create_dot(hclust_t *clust, char **labels, float th);
/dports/biology/bio-mocha/bcftools-1.14/
H A Dhclust.c73 if ( clust->nrmme >= clust->ndat*2 ) error("hclust fixme: %d vs %d\n",clust->nrmme,clust->ndat); in append_node()
74 clust->rmme[clust->nrmme++] = node; in append_node()
80 if ( node==clust->first ) clust->first = node->next; in remove_node()
81 if ( node==clust->last ) clust->last = node->prev; in remove_node()
135 for (i=0; i<clust->ndat; i++) append_node(clust,i); in hclust_init()
241 hts_expand(char*,clust->ndbg,clust->mdbg,clust->dbg); in hclust_explain()
242 clust->dbg[clust->ndbg-1] = beg; in hclust_explain()
277 clust->memb = (int*) realloc(clust->memb,sizeof(int)*clust->nmemb); in append_cluster()
278 clust->memb[clust->nmemb-1] = node->id; in append_cluster()
313 node_t **dat = clust->rmme + clust->ndat; in hclust_set_threshold()
[all …]
H A Dhclust.h54 void hclust_destroy(hclust_t *clust);
64 cluster_t *hclust_create_list(hclust_t *clust, float min_inter_dist, float *max_intra_dist, int *nc…
65 void hclust_destroy_list(cluster_t *clust, int nclust);
72 char **hclust_explain(hclust_t *clust, int *nlines);
74 char *hclust_create_dot(hclust_t *clust, char **labels, float th);
/dports/biology/py-pysam/pysam-0.18.0/bcftools/
H A Dhclust.c73 if ( clust->nrmme >= clust->ndat*2 ) error("hclust fixme: %d vs %d\n",clust->nrmme,clust->ndat); in append_node()
74 clust->rmme[clust->nrmme++] = node; in append_node()
80 if ( node==clust->first ) clust->first = node->next; in remove_node()
81 if ( node==clust->last ) clust->last = node->prev; in remove_node()
135 for (i=0; i<clust->ndat; i++) append_node(clust,i); in hclust_init()
241 hts_expand(char*,clust->ndbg,clust->mdbg,clust->dbg); in hclust_explain()
242 clust->dbg[clust->ndbg-1] = beg; in hclust_explain()
277 clust->memb = (int*) realloc(clust->memb,sizeof(int)*clust->nmemb); in append_cluster()
278 clust->memb[clust->nmemb-1] = node->id; in append_cluster()
313 node_t **dat = clust->rmme + clust->ndat; in hclust_set_threshold()
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H A Dhclust.c.pysam.c75 if ( clust->nrmme >= clust->ndat*2 ) error("hclust fixme: %d vs %d\n",clust->nrmme,clust->ndat); in append_node()
76 clust->rmme[clust->nrmme++] = node; in append_node()
82 if ( node==clust->first ) clust->first = node->next; in remove_node()
83 if ( node==clust->last ) clust->last = node->prev; in remove_node()
137 for (i=0; i<clust->ndat; i++) append_node(clust,i); in hclust_init()
243 hts_expand(char*,clust->ndbg,clust->mdbg,clust->dbg); in hclust_explain()
244 clust->dbg[clust->ndbg-1] = beg; in hclust_explain()
279 clust->memb = (int*) realloc(clust->memb,sizeof(int)*clust->nmemb); in append_cluster()
280 clust->memb[clust->nmemb-1] = node->id; in append_cluster()
315 node_t **dat = clust->rmme + clust->ndat; in hclust_set_threshold()
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H A Dhclust.h54 void hclust_destroy(hclust_t *clust);
64 cluster_t *hclust_create_list(hclust_t *clust, float min_inter_dist, float *max_intra_dist, int *nc…
65 void hclust_destroy_list(cluster_t *clust, int nclust);
72 char **hclust_explain(hclust_t *clust, int *nlines);
74 char *hclust_create_dot(hclust_t *clust, char **labels, float th);
/dports/science/py-scikit-learn/scikit-learn-1.0.2/sklearn/cluster/tests/
H A Dtest_optics.py102 clust = OPTICS(
108 clust = OPTICS(
119 clust = OPTICS(
132 clust = OPTICS(
160 clust.fit(X)
162 n_clusters_1 = len(set(clust.labels_)) - int(-1 in clust.labels_)
190 clust.fit(X)
204 clust.fit(X)
216 clust.fit(X)
329 cluster_sizes = np.bincount(clust.labels_[clust.labels_ != -1])
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/dports/science/afni/afni-AFNI_21.3.16/src/
H A Dedt_clust.c116 jc = clust->j[icl]; in MCW_find_clusters()
117 kc = clust->k[icl]; in MCW_find_clusters()
142 ic = clust->i[icl]; in MCW_find_clusters()
143 jc = clust->j[icl]; in MCW_find_clusters()
144 kc = clust->k[icl]; in MCW_find_clusters()
230 ijk = THREE_TO_IJK (clust->i[icl], clust->j[icl], clust->k[icl], in MCW_cluster_to_vol()
240 ijk = THREE_TO_IJK (clust->i[icl], clust->j[icl], clust->k[icl], in MCW_cluster_to_vol()
250 ijk = THREE_TO_IJK (clust->i[icl], clust->j[icl], clust->k[icl], in MCW_cluster_to_vol()
287 ijk = THREE_TO_IJK (clust->i[icl], clust->j[icl], clust->k[icl], in MCW_vol_to_cluster()
297 ijk = THREE_TO_IJK (clust->i[icl], clust->j[icl], clust->k[icl], in MCW_vol_to_cluster()
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H A Dedt_clust2.c19 MCW_cluster *clust , *mask=NULL ; in NIH_find_clusters() local
110 for( icl=0 ; icl < clust->num_pt ; icl++ ){ in NIH_find_clusters()
112 jc = clust->j[icl]; in NIH_find_clusters()
113 kc = clust->k[icl]; in NIH_find_clusters()
133 ic = clust->i[icl]; in NIH_find_clusters()
134 jc = clust->j[icl]; in NIH_find_clusters()
135 kc = clust->k[icl]; in NIH_find_clusters()
155 ic = clust->i[icl]; in NIH_find_clusters()
156 jc = clust->j[icl]; in NIH_find_clusters()
157 kc = clust->k[icl]; in NIH_find_clusters()
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H A Dthd_avts.c15 MCW_cluster *clust ; in THD_average_timeseries() local
33 clust = clustar->clar[jj] ; in THD_average_timeseries()
34 if( clust == NULL || clust->num_pt == 0 ) continue ; in THD_average_timeseries()
35 npt = clust->num_pt ; in THD_average_timeseries()
38 ijk = THREE_TO_IJK(clust->i[kk],clust->j[kk],clust->k[kk],nx,nxy) ; in THD_average_timeseries()
57 MRI_IMAGE * THD_average_one_timeseries( MCW_cluster *clust , in THD_average_one_timeseries() argument
65 if( clust == NULL || !ISVALID_DSET(dset) ) RETURN(NULL) ; in THD_average_one_timeseries()
68 ADDTO_CLARR(clustar,clust) ; in THD_average_one_timeseries()
H A Dmri_clusterize.c330 MCW_cluster *clust ;
349 INIT_CLUSTER(clust) ;
358 ii = clust->i[icl] ; jj = clust->j[icl] ; kk = clust->k[icl] ;
369 ADDTO_CLARR(clust_arr,clust) ;
381 MCW_cluster *clust ;
400 INIT_CLUSTER(clust) ;
409 ii = clust->i[icl] ; jj = clust->j[icl] ; kk = clust->k[icl] ;
436 ADDTO_CLARR(clust_arr,clust) ;
448 MCW_cluster *clust ;
467 INIT_CLUSTER(clust) ;
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H A Dmri_alphasim.c17 MCW_cluster *clust , *mask ;
59 ic = clust->i[icl] ;
60 jc = clust->j[icl] ;
61 kc = clust->k[icl] ;
76 if( clust->num_pt >= minsize ){
78 iv->ar[nclu++] = clust->num_pt ;
100 MCW_cluster *clust , *mask ; in ALP_largest_clustersize() local
142 ic = clust->i[icl] ; in ALP_largest_clustersize()
143 jc = clust->j[icl] ; in ALP_largest_clustersize()
144 kc = clust->k[icl] ; in ALP_largest_clustersize()
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/dports/science/py-scikit-learn/scikit-learn-1.0.2/examples/cluster/
H A Dplot_optics.py44 clust.fit(X)
47 reachability=clust.reachability_,
48 core_distances=clust.core_distances_,
49 ordering=clust.ordering_,
53 reachability=clust.reachability_,
54 core_distances=clust.core_distances_,
55 ordering=clust.ordering_,
60 reachability = clust.reachability_[clust.ordering_]
61 labels = clust.labels_[clust.ordering_]
85 Xk = X[clust.labels_ == klass]
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/dports/sysutils/fatback/fatback-1.3/
H A Dcmd_chain.c36 unsigned long clust = 0; in cmd_chain() local
41 clust = clust ? clusts[clust].fat_entry : dent->cluster; in cmd_chain()
42 display(NORMAL, "%10lu", clust); in cmd_chain()
43 } while (clust >= 2 && in cmd_chain()
44 !clust_is_end(&clusts[clust]) && in cmd_chain()
45 !clust_is_bad(&clusts[clust])); in cmd_chain()
H A Drecovery.c53 unsigned long clust = 0, left;
107 clust = clust ? clusts[clust].fat_entry : cluster;
115 if ((clust > max_cluster) || (clust < 2)) {
122 if (ent && ent != clusts[clust].owner) {
123 if (clusts[clust].flags & CLUST_ACTIVE) {
141 read_data(buffer, clusts[clust].loc, bytes_per_clust);
143 display(NORMAL, error_reading, clusts[clust].loc);
157 clusts[clust].flags |= CLUST_RECOVERED;
160 !clust_is_end(&clusts[clust]) &&
161 !clust_is_bad(&clusts[clust]) &&
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/dports/cad/PrusaSlicer/PrusaSlicer-version_2.3.3/src/libslic3r/SLA/
H A DClustering.hpp33 long cluster_centroid(const ClusterEl &clust, PointFn pointfn, DistFn df) in cluster_centroid() argument
35 switch(clust.size()) { in cluster_centroid()
53 std::vector<bool> sel(clust.size(), false); // create full zero bitmask in cluster_centroid()
55 std::vector<double> avgs(clust.size(), 0.0); // store the average distances in cluster_centroid()
59 for(size_t i = 0, j = 0; i < clust.size(); i++) in cluster_centroid()
62 double d = df(pointfn(clust[idx[0]]), in cluster_centroid()
63 pointfn(clust[idx[1]])); in cluster_centroid()
72 for(auto& a : avgs) a /= clust.size(); in cluster_centroid()
/dports/science/gromacs/gromacs-2021.4/src/gromacs/gmxana/
H A Dgmx_cluster.cpp325 return a.clust < b.clust; in clust_id_comp()
371 diff = c[d[k].j].clust - c[d[k].i].clust; in gather()
394 if (c[k].clust != c[k - 1].clust) in gather()
415 clust->cl[c[k].conf] = c[k].clust; in gather()
564 diff = c[j].clust - c[i].clust; in jarvis_patrick()
570 c[j].clust = c[i].clust; in jarvis_patrick()
574 c[i].clust = c[j].clust; in jarvis_patrick()
590 if (c[k].clust != c[k - 1].clust) in jarvis_patrick()
604 clust->cl[c[k].conf] = c[k].clust; in jarvis_patrick()
868 if (clust->cl[i] == clust->cl[j]) in mark_clusters()
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/dports/math/octave-forge-statistics/statistics-1.4.3/inst/
H A Devalclusters.m140 if (ischar (clust))
141 clust = lower (clust); variable
145 elseif (! isscalar (clust))
146 if ((! isnumeric (clust)) || (length (size (clust)) != 2) || ...
147 (rows (clust) != n))
189 if (ischar (clust) || isa (clust, "function_handle"))
279 if (isempty (klist) && (ischar (clust) || isa (clust, "function_handle")))
290 klist = 1 : columns (clust);
298 klist = 1 : columns (clust);
306 klist = 1 : columns (clust);
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/dports/graphics/graphviz/graphviz-2.44.1/lib/dotgen/
H A Dcluster.c303 graph_t *clust; in mark_clusters() local
313 clust = GD_clust(g)[c]; in mark_clusters()
320 agdelete(clust,n); in mark_clusters()
324 ND_clust(n) = clust; in mark_clusters()
332 ND_clust(vn) = clust; in mark_clusters()
382 graph_t *clust; in install_cluster() local
384 clust = ND_clust(n); in install_cluster()
386 for (r = GD_minrank(clust); r <= GD_maxrank(clust); r++) in install_cluster()
388 for (r = GD_minrank(clust); r <= GD_maxrank(clust); r++) in install_cluster()
419 Agraph_t *clust; in mark_lowcluster_basic() local
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/dports/science/py-rmf/rmf-1.3.1/test/
H A Dtest_provenance.py27 clust = clustpf.get(clust_node)
28 clust.set_members(10)
29 clust.set_precision(2.0)
30 clust.set_density(os.path.abspath('foo.mrc'))
96 clust = clustpf.get(prov_root)
97 self.assertEqual(clust.get_members(), 10)
98 self.assertAlmostEqual(clust.get_precision(), 2.0, delta=1e-5)
103 clust = clustpf.get(clust_node)
104 self.assertEqual(clust.get_members(), 10)
105 self.assertAlmostEqual(clust.get_precision(), 0.0, delta=1e-5)
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/dports/science/rmf/rmf-1.3.1/test/
H A Dtest_provenance.py27 clust = clustpf.get(clust_node)
28 clust.set_members(10)
29 clust.set_precision(2.0)
30 clust.set_density(os.path.abspath('foo.mrc'))
96 clust = clustpf.get(prov_root)
97 self.assertEqual(clust.get_members(), 10)
98 self.assertAlmostEqual(clust.get_precision(), 2.0, delta=1e-5)
103 clust = clustpf.get(clust_node)
104 self.assertEqual(clust.get_members(), 10)
105 self.assertAlmostEqual(clust.get_precision(), 0.0, delta=1e-5)
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/dports/sysutils/py-pytsk/pytsk3-20210419/sleuthkit/tsk/fs/
H A Dfatfs.c244 if (clust > fatfs->lastclust) {
246 if ((clust == fatfs->lastclust + 1) &&
258 PRIuDADDR, clust);
264 if (clust & 0xf000) {
269 " too large", clust);
275 ((clust + (clust >> 1)) >> fatfs->ssize_sh);
288 (clust + (clust >> 1)) % fatfs->ssize;
314 offs = (clust + (clust >> 1)) % fatfs->ssize;
325 if (clust & 1)
357 ((clust << 1) % fatfs->ssize);
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H A Dfatfs_meta.c93 TSK_DADDR_T clust = 0;
99 first_clust_addr_ptr[0] = clust;
103 while ((clust) && (0 == FATFS_ISEOF(clust, FATFS_32_MASK))) {
125 clust = nxt;
400 TSK_DADDR_T clust = 0;
458 (clust == 1)) {
519 data_run->addr = clust;
620 clust = startclust;
647 clust++;
680 clust++;
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/dports/sysutils/sleuthkit/sleuthkit-4.7.0/tsk/fs/
H A Dfatfs.c244 if (clust > fatfs->lastclust) { in fatfs_getFAT()
246 if ((clust == fatfs->lastclust + 1) && in fatfs_getFAT()
258 PRIuDADDR, clust); in fatfs_getFAT()
264 if (clust & 0xf000) { in fatfs_getFAT()
269 " too large", clust); in fatfs_getFAT()
275 ((clust + (clust >> 1)) >> fatfs->ssize_sh); in fatfs_getFAT()
288 (clust + (clust >> 1)) % fatfs->ssize; in fatfs_getFAT()
314 offs = (clust + (clust >> 1)) % fatfs->ssize; in fatfs_getFAT()
325 if (clust & 1) in fatfs_getFAT()
357 ((clust << 1) % fatfs->ssize); in fatfs_getFAT()
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