| /dports/biology/wise/wise2.4.1/src/dnaindex/ |
| H A D | dnanumber.dy | 52 basepair = complement_base(basepair);
82 backward = complement_base(base_from_char(str[nmer_size-1-i]));
108 …,"For position %d, [%d], using %d [%c]as complemented base\n",i,base,complement_base(base_from_cha…
110 out.number += base * complement_base(base_from_char(str[nmer_size-1-i]));
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| H A D | dnamapping.c | 43 total += complement_base(base_number[kmer_size-i-1]) * base; in reverse_complement_dna_number()
88 return char_from_base(complement_base(last_base)); in lexical_last_base_from_kmer()
116 rev_buffer[kmer_size-i-1] = complement_base(no); in lexical_dna_number_from_string()
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| H A D | dnanumber.c | 37 basepair = complement_base(basepair); in first_char_from_dnanumber()
68 backward = complement_base(base_from_char(str[nmer_size-1-i])); in dna_number_from_string()
96 out.number += base * complement_base(base_from_char(str[nmer_size-1-i])); in dna_number_from_string()
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| H A D | dnamapping.dy | 55 total += complement_base(base_number[kmer_size-i-1]) * base;
98 return char_from_base(complement_base(last_base));
125 rev_buffer[kmer_size-i-1] = complement_base(no);
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| H A D | vectorindex.dy | 90 backward = complement_base(base_from_char(input->seq[curr+KMER_VECTOR_SIZE-k]));
107 vec += base[k] * complement_base(base_from_char(input->seq[curr+KMER_VECTOR_SIZE-k]));
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| H A D | vectorindex.c | 73 backward = complement_base(base_from_char(input->seq[curr+KMER_VECTOR_SIZE-k])); in build_KmerVectorPositionSet()
90 vec += base[k] * complement_base(base_from_char(input->seq[curr+KMER_VECTOR_SIZE-k])); in build_KmerVectorPositionSet()
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| /dports/biology/wise/wise2.4.1/src/dynlibsrc/ |
| H A D | codon.c | 438 one = complement_base(one); in reverse_codon()
439 two = complement_base(two); in reverse_codon()
440 three = complement_base(three); in reverse_codon()
621 return char_from_base(complement_base(base_from_char(c))); in char_complement_base()
636 base complement_base(base b) in complement_base() function
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| H A D | codon.dy | 46 func complement_base
413 one = complement_base(one);
414 two = complement_base(two);
415 three = complement_base(three);
541 the char equivalent of /complement_base.
551 return char_from_base(complement_base(base_from_char(c)));
558 base complement_base(base b)
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| H A D | codon.pod | 341 the char equivalent of /complement_base.
351 =item complement_base
353 &Wise2::complement_base(b)
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| H A D | codon.h | 417 #define complement_base Wise2_complement_base macro
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| H A D | codon.tex | 188 the char equivalent of /complement_base.
193 \subsubsection{complement_base} subsubsection
196 \item[Perl] {\tt &Wise2::complement_base (b)}
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| H A D | codon.xs | 248 complement_base(b)
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| H A D | pairbase.c | 701 anchor = complement_base(anchor); in complement_pairbase()
704 informant = complement_base(informant); in complement_pairbase()
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| H A D | pairbase.dy | 587 anchor = complement_base(anchor);
590 informant = complement_base(informant);
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| /dports/devel/boost-docs/boost_1_72_0/libs/detail/test/ |
| H A D | numeric_traits_test.cpp | 84 template <bool is_signed> struct complement_base;
86 template <> struct complement_base<false> struct
96 template <> struct complement_base<true> struct
115 complement_base<is_signed>::template values<Number>::min); argument
117 complement_base<is_signed>::template values<Number>::max);
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| /dports/devel/boost-python-libs/boost_1_72_0/libs/detail/test/ |
| H A D | numeric_traits_test.cpp | 84 template <bool is_signed> struct complement_base;
86 template <> struct complement_base<false> struct
96 template <> struct complement_base<true> struct
115 complement_base<is_signed>::template values<Number>::min); argument
117 complement_base<is_signed>::template values<Number>::max);
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| /dports/databases/percona57-pam-for-mysql/boost_1_59_0/libs/utility/ |
| H A D | numeric_traits_test.cpp | 83 template <bool is_signed> struct complement_base;
85 template <> struct complement_base<false> struct
95 template <> struct complement_base<true> argument
114 complement_base<is_signed>::template values<Number>::min); argument
116 complement_base<is_signed>::template values<Number>::max);
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| /dports/databases/mysqlwsrep57-server/boost_1_59_0/libs/utility/ |
| H A D | numeric_traits_test.cpp | 83 template <bool is_signed> struct complement_base;
85 template <> struct complement_base<false> struct
95 template <> struct complement_base<true> argument
114 complement_base<is_signed>::template values<Number>::min); argument
116 complement_base<is_signed>::template values<Number>::max);
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| /dports/databases/percona57-server/boost_1_59_0/libs/utility/ |
| H A D | numeric_traits_test.cpp | 83 template <bool is_signed> struct complement_base;
85 template <> struct complement_base<false> struct
95 template <> struct complement_base<true> struct
114 complement_base<is_signed>::template values<Number>::min); argument
116 complement_base<is_signed>::template values<Number>::max);
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| /dports/databases/xtrabackup/boost_1_59_0/libs/utility/ |
| H A D | numeric_traits_test.cpp | 83 template <bool is_signed> struct complement_base;
85 template <> struct complement_base<false> struct
95 template <> struct complement_base<true> struct
114 complement_base<is_signed>::template values<Number>::min); argument
116 complement_base<is_signed>::template values<Number>::max);
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| /dports/databases/percona57-client/boost_1_59_0/libs/utility/ |
| H A D | numeric_traits_test.cpp | 83 template <bool is_signed> struct complement_base;
85 template <> struct complement_base<false> struct
95 template <> struct complement_base<true> argument
114 complement_base<is_signed>::template values<Number>::min); argument
116 complement_base<is_signed>::template values<Number>::max);
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| /dports/devel/boost-libs/boost_1_72_0/libs/detail/test/ |
| H A D | numeric_traits_test.cpp | 84 template <bool is_signed> struct complement_base;
86 template <> struct complement_base<false> struct
96 template <> struct complement_base<true> struct
115 complement_base<is_signed>::template values<Number>::min); argument
117 complement_base<is_signed>::template values<Number>::max);
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| /dports/devel/hyperscan/boost_1_75_0/libs/detail/test/ |
| H A D | numeric_traits_test.cpp | 84 template <bool is_signed> struct complement_base;
86 template <> struct complement_base<false> struct
96 template <> struct complement_base<true> argument
115 complement_base<is_signed>::template values<Number>::min); argument
117 complement_base<is_signed>::template values<Number>::max);
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| /dports/databases/mongodb36/mongodb-src-r3.6.23/src/third_party/boost-1.60.0/libs/utility/ |
| H A D | numeric_traits_test.cpp | 83 template <bool is_signed> struct complement_base;
85 template <> struct complement_base<false> struct
95 template <> struct complement_base<true> struct
114 complement_base<is_signed>::template values<Number>::min); argument
116 complement_base<is_signed>::template values<Number>::max);
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| /dports/biology/seaview/seaview/ |
| H A D | seaview.h | 337 extern char complement_base(char old);
|