| /dports/biology/vt/vt-0.57721/ |
| H A D | vntr_genotyping_record.cpp | 352 …float bqr = sqrt_dp_ra * Estimator::compute_correlation( tmp_dp_ra, tmp_bq_al, tmp_bq_s1, tmp_bq_s… in flush_sample()
353 …float mqr = sqrt_dp_ra * Estimator::compute_correlation( tmp_dp_ra, tmp_mq_al, tmp_mq_s1, tmp_mq_s… in flush_sample()
355 …float str = sqrt_dp_ra * Estimator::compute_correlation( tmp_dp_ra, tmp_st_al, tmp_st_s1, tmp_st_s… in flush_sample()
356 …float nmr = sqrt_dp_ra * Estimator::compute_correlation( tmp_dp_ra, tmp_nm_al, tmp_nm_s1, tmp_nm_s… in flush_sample()
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| H A D | snp_genotyping_record.cpp | 355 …float bqr = sqrt_dp_ra * Estimator::compute_correlation( tmp_dp_ra, tmp_bq_al, tmp_bq_s1, tmp_bq_s… in flush_sample()
356 …float mqr = sqrt_dp_ra * Estimator::compute_correlation( tmp_dp_ra, tmp_mq_al, tmp_mq_s1, tmp_mq_s… in flush_sample()
358 …float str = sqrt_dp_ra * Estimator::compute_correlation( tmp_dp_ra, tmp_st_al, tmp_st_s1, tmp_st_s… in flush_sample()
359 …float nmr = sqrt_dp_ra * Estimator::compute_correlation( tmp_dp_ra, tmp_nm_al, tmp_nm_s1, tmp_nm_s… in flush_sample()
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| H A D | estimator.h | 181 …static float compute_correlation(int32_t n, int32_t xy, int32_t x1, int32_t x2, int32_t y1, int32_…
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| H A D | indel_genotyping_record.cpp | 368 …float bqr = sqrt_dp_ra * Estimator::compute_correlation( tmp_dp_ra, tmp_bq_al, tmp_bq_s1, tmp_bq_s… in flush_sample()
369 …float mqr = sqrt_dp_ra * Estimator::compute_correlation( tmp_dp_ra, tmp_mq_al, tmp_mq_s1, tmp_mq_s… in flush_sample()
371 …float str = sqrt_dp_ra * Estimator::compute_correlation( tmp_dp_ra, tmp_st_al, tmp_st_s1, tmp_st_s… in flush_sample()
372 …float nmr = sqrt_dp_ra * Estimator::compute_correlation( tmp_dp_ra, tmp_nm_al, tmp_nm_s1, tmp_nm_s… in flush_sample()
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| H A D | complex_genotyping_record.cpp | 404 …float bqr = sqrt_dp_ra * Estimator::compute_correlation( tmp_dp_ra, tmp_bq_al, tmp_bq_s1, tmp_bq_s… in flush_sample()
405 …float mqr = sqrt_dp_ra * Estimator::compute_correlation( tmp_dp_ra, tmp_mq_al, tmp_mq_s1, tmp_mq_s… in flush_sample()
407 …float str = sqrt_dp_ra * Estimator::compute_correlation( tmp_dp_ra, tmp_st_al, tmp_st_s1, tmp_st_s… in flush_sample()
408 …float nmr = sqrt_dp_ra * Estimator::compute_correlation( tmp_dp_ra, tmp_nm_al, tmp_nm_s1, tmp_nm_s… in flush_sample()
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| H A D | paste_and_compute_features_sequential.cpp | 183 …float compute_correlation(int32_t n, int32_t xy, int32_t x1, int32_t x2, int32_t y1, int32_t y2, f… in compute_correlation() function in __anond07ea7a50111::Igor
552 … float bqr = sqrt_dp_ra * compute_correlation( dp_ra, bq_al, bq_s1, bq_s2, al_s1, al_s1, .1 ); in paste_and_compute_features_sequential()
553 … float mqr = sqrt_dp_ra * compute_correlation( dp_ra, mq_al, mq_s1, mq_s2, al_s1, al_s1, .1 ); in paste_and_compute_features_sequential()
555 … float str = sqrt_dp_ra * compute_correlation( dp_ra, st_al, st_s1, st_s1, al_s1, al_s1, .1 ); in paste_and_compute_features_sequential()
556 … float nmr = sqrt_dp_ra * compute_correlation( dp_ra, nm_al, nm_s1, nm_s2, al_s1, al_s1, .1 ); in paste_and_compute_features_sequential()
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| H A D | paste_genotypes.cpp | 188 …float compute_correlation(int32_t n, int32_t xy, int32_t x1, int32_t x2, int32_t y1, int32_t y2, f… in compute_correlation() function in __anon02eca37c0111::Igor
572 … float bqr = sqrt_dp_ra * compute_correlation( dp_ra, bq_al, bq_s1, bq_s2, al_s1, al_s1, .1 ); in paste_genotypes()
573 … float mqr = sqrt_dp_ra * compute_correlation( dp_ra, mq_al, mq_s1, mq_s2, al_s1, al_s1, .1 ); in paste_genotypes()
575 … float str = sqrt_dp_ra * compute_correlation( dp_ra, st_al, st_s1, st_s1, al_s1, al_s1, .1 ); in paste_genotypes()
576 … float nmr = sqrt_dp_ra * compute_correlation( dp_ra, nm_al, nm_s1, nm_s2, al_s1, al_s1, .1 ); in paste_genotypes()
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| H A D | estimator.cpp | 884 float Estimator::compute_correlation(int32_t n, int32_t xy, int32_t x1, int32_t x2, int32_t y1, int… in compute_correlation() function in Estimator
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| /dports/biology/py-deeptools/deepTools-3.5.1/deeptools/ |
| H A D | correlation.py | 75 self.compute_correlation()
187 def compute_correlation(self): member in Correlation
269 corr_matrix = self.compute_correlation()
437 corr_matrix = self.compute_correlation()
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| /dports/misc/orange3/orange3-3.29.1/Orange/distance/ |
| H A D | distance.py | 573 rho = self.compute_correlation(x1, x2)
579 def compute_correlation(self, x1, x2): member in CorrelationDistanceModel
584 def compute_correlation(self, x1, x2): member in SpearmanModel
715 def compute_correlation(self, x1, x2): member in PearsonModel
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