Searched refs:contig_seq (Results 1 – 5 of 5) sorted by relevance
| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/algo/gnomon/ |
| H A D | variations.hpp | 99 CMultAlign(const string& contig_seq, const string& contig_acc) { in CMultAlign() argument
102 m_contigt = contig_seq; in CMultAlign()
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/gnomon/ |
| H A D | gnomon_seq.hpp | 103 void FindStartsStops(const CGeneModel& model, const CEResidueVec& contig_seq, const CEResidueVec& m…
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| H A D | asn1.cpp | 72 SModelData(const CAlignModel& model, const CEResidueVec& contig_seq, int shift);
82 SModelData::SModelData(const CAlignModel& m, const CEResidueVec& contig_seq, int shift) : model(m) in SModelData() argument
92 amap.EditedSequence(contig_seq, mrna_seq, true); in SModelData()
125 CEResidueVec contig_seq; member in CAnnotationASN1::CImplementationData
184 Convert(seq, contig_seq); in CImplementationData()
250 SModelData md(model, contig_seq, shift); in AddModel()
437 smd.reset( new SModelData(*m, contig_seq, shift) ); in DumpEvidence()
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| H A D | gnomon_seq.cpp | 182 void FindStartsStops(const CGeneModel& model, const CEResidueVec& contig_seq, const CEResidueVec& m… in FindStartsStops() argument
242 model_start = contig_seq.size()-1-model_start; in FindStartsStops()
246 if(Partial5pCodonIsStop(contig_seq,model_start,i)) in FindStartsStops()
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| /dports/biology/ncbi-toolkit/ncbi/api/ |
| H A D | aceread.c | 1755 (char *contig_seq, in s_AlignmentSeqFromContigSeq() argument
1771 cp = contig_seq; in s_AlignmentSeqFromContigSeq()
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