/dports/biology/py-bx-python/bx-python-0.8.13/scripts/ |
H A D | div_snp_table_chr.py | 103 snp_count = snp[chr].count_range(0, snp[chr].size) 107 div_count = div[chr].count_range(0, div[chr].size) 119 feature_snp_count += snp[chr].count_range(0, snp[chr].size) 120 …print(snp[chr].count_range(0, snp[chr].size), div[chr].count_range(0, div[chr].size), file=sys.std… 121 feature_div_count += div[chr].count_range(0, div[chr].size) 122 …print(snp[chr].count_range(0, snp[chr].size), div[chr].count_range(0, div[chr].size), file=sys.std… 127 ind_div_count = div[chr].count_range(start, end-start) 128 ind_snp_count = snp[chr].count_range(start, end-start)
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H A D | mMK_bitset.py | 111 AR_snp = AR_snp_bitsets[chr].count_range(window, window_size) 112 AR_div = AR_div_bitsets[chr].count_range(window, window_size) 113 nonAR_snp = nonAR_snp_bitsets[chr].count_range(window, window_size) 114 nonAR_div = nonAR_div_bitsets[chr].count_range(window, window_size)
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H A D | bed_coverage_by_interval.py | 44 bases_covered = bitsets[chr].count_range(start, end-start) 47 bases_masked = mask[chr].count_range(start, end-start)
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H A D | bed_coverage.py | 26 total += bitsets[chrom].count_range(0, bitsets[chrom].size)
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H A D | bed_rand_intersect.py | 89 return b.count_range(0, b.size) 156 total_samples[i, featnum] += random2.count_range(0, random2.size)
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H A D | bed_diff_basewise_summary.py | 17 total += bitsets[chrom].count_range(0, bitsets[chrom].size)
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H A D | bed_intersect.py | 53 if fields[0] in bitsets and bitsets[fields[0]].count_range(start, end-start) >= mincols:
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/util/bitset/demo/ |
H A D | bm_sparse_sample.cpp | 81 unsigned sparse_idx = bv.count_range(0, 100 - 1); in main() 86 unsigned sparse_idx = bv.count_range(0, 90001 - 1); in main() 100 unsigned sparse_idx = bv.count_range(0, 100 - 1, rs_index); in main() 105 unsigned sparse_idx = bv.count_range(0, 90001 - 1, rs_index); in main()
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/dports/biology/py-bx-python/bx-python-0.8.13/lib/bx/ |
H A D | bitset_tests.py | 58 self.assertEqual(bits.count_range(0, 0), 0) 59 self.assertEqual(bits.count_range(0, 20), 3) 60 self.assertEqual(bits.count_range(25, 25), 25) 61 self.assertEqual(bits.count_range(80, 20), 10) 62 self.assertEqual(bits.count_range(0, 100), 68)
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H A D | bitset.pyx | 136 def count_range( self, start=0, count=None ): member in BitSet 218 def count_range( self, start, count ): member in BinnedBitSet
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/readers/hgvs/ |
H A D | hgvs_nucleic_acid_parser.cpp | 58 (nucleotide_location >> count_range ) ACTION2(AssignNtSSR) | in SHgvsNucleicAcidGrammar() 59 (nucleotide_location >> nucleotide_seq >> count_range) ACTION3(AssignNtSSR) | in SHgvsNucleicAcidGrammar() 109 count_range VALASSIGN; in SHgvsNucleicAcidGrammar() 113 count_range = ("(" >> val_or_unknown >> "_" >> val_or_unknown >> ")") ACTION2(AssignCountRange); in SHgvsNucleicAcidGrammar()
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/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/include/util/bitset/ |
H A D | bmsparsevec_compr.h | 962 size_type sv_idx = bv_null->count_range(0, idx); in set_null() 981 : bv_null->count_range(0, idx); // TODO: make test'n'count in inc() 1013 : bv_null->count_range(0, idx); // TODO: make test'n'count in inc() 1043 : bv_null->count_range(0, idx); // TODO: make test'n'count in inc_not_null() 1064 : bv_null->count_range(0, idx); // TODO: make test'n'count in set() 1221 *idx_to = found ? bv_null->count_range(0, idx) : 0; in resolve() 1237 copy_sz = bv_null->count_range(from, to, *bv_blocks_ptr_); in resolve_range() 1239 copy_sz = bv_null->count_range(from, to); in resolve_range() 1247 sv_left = bv_null->count_range(0, from); in resolve_range() 1409 BM_ASSERT(rank == bv_null->count_range(0, idx_from) - bv_null->test(idx_from)); in decode() [all …]
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/util/bitset/ |
H A D | bmsparsevec_compr.h | 962 size_type sv_idx = bv_null->count_range(0, idx); in set_null() 981 : bv_null->count_range(0, idx); // TODO: make test'n'count in inc() 1013 : bv_null->count_range(0, idx); // TODO: make test'n'count in inc() 1043 : bv_null->count_range(0, idx); // TODO: make test'n'count in inc_not_null() 1064 : bv_null->count_range(0, idx); // TODO: make test'n'count in set() 1221 *idx_to = found ? bv_null->count_range(0, idx) : 0; in resolve() 1237 copy_sz = bv_null->count_range(from, to, *bv_blocks_ptr_); in resolve_range() 1239 copy_sz = bv_null->count_range(from, to); in resolve_range() 1247 sv_left = bv_null->count_range(0, from); in resolve_range() 1409 BM_ASSERT(rank == bv_null->count_range(0, idx_from) - bv_null->test(idx_from)); in decode() [all …]
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/util/bitset/stress_test/ |
H A D | rlebtv.h | 59 unsigned count_range(unsigned left, 216 unsigned gap_vector::count_range(unsigned left, in count_range() function
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H A D | test_util.h | 107 auto r = bv.count_range(prev_id, v1); 169 auto cnt = bv.count_range(from, to); in IntervalsCheck() 186 typename BV::size_type cnt = bv.count_range(to, from); in IntervalsCheck() 203 typename BV::size_type cnt = bv.count_range(from, to); in IntervalsCheck()
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/dports/biology/py-bx-python/bx-python-0.8.13/lib/bx/intervals/operations/ |
H A D | base_coverage.py | 17 coverage += bitsets[chrom].count_range(0, MAX_END)
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H A D | coverage.py | 59 bases_covered = bitsets[chrom].count_range(start, end-start)
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H A D | subtract.py | 59 if bitsets[chrom].count_range(start, end-start) >= mincols:
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H A D | intersect.py | 62 if bitsets[chrom].count_range(start, end-start) >= mincols:
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/dports/sysutils/ansible2/ansible-2.9.27/lib/ansible/modules/cloud/packet/ |
H A D | packet_device.py | 401 count_range = range(count_offset, count_offset + count) 403 hostnames = [hostname_spec % i for i in count_range] 406 hostnames = [hostname_spec % i for i in count_range]
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/dports/sysutils/ansible/ansible-4.7.0/ansible_collections/community/general/plugins/modules/cloud/packet/ |
H A D | packet_device.py | 421 count_range = range(count_offset, count_offset + count) 423 hostnames = [hostname_spec % i for i in count_range] 426 hostnames = [hostname_spec % i for i in count_range]
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/dports/sysutils/ansible/ansible-4.7.0/ansible_collections/community/general/plugins/modules/ |
H A D | packet_device.py | 421 count_range = range(count_offset, count_offset + count) 423 hostnames = [hostname_spec % i for i in count_range] 426 hostnames = [hostname_spec % i for i in count_range]
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/objtools/readers/hgvs/ |
H A D | hgvs_nucleic_acid_parser.hpp | 51 TRule<CCount> count_range; member
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/dports/cad/ghdl/ghdl-1.0.0/testsuite/gna/bug24065/ |
H A D | cic_up.vhd | 83 subtype count_range is natural range log(2,out_rate)-1 downto 0; subtype 95 signal count : unsigned(count_range) := (others => '0');
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/dports/biology/py-bx-python/bx-python-0.8.13/lib/bx/intervals/ |
H A D | random_intervals.py | 27 assert rval.count_range(0, rval.size) == sum(lengths)
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