| /dports/math/gap/gap-4.11.0/pkg/kbmag-1.5.9/standalone/lib/ |
| H A D | diffredwl.c | 88 } * gptr, *ngptr, *substruc, *cstruc; in make_substitution() local
159 cstruc = gptr + diffct; in make_substitution()
160 diff = cstruc->diffno; in make_substitution()
166 csubwt = cstruc->subwt + weight[gen2]; in make_substitution()
195 gen2 = cstruc->genno; in make_substitution()
196 cstruc = cstruc->backptr; in make_substitution()
204 while (cstruc) { in make_substitution()
206 gen2 = cstruc->genno; in make_substitution()
207 cstruc = cstruc->backptr; in make_substitution()
233 substruc->backptr = cstruc; in make_substitution()
[all …]
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| /dports/biology/viennarna/ViennaRNA-2.4.18/src/bin/ |
| H A D | RNAsubopt.c | 69 **rec_rest, *orig_sequence, *constraints_file, *cstruc, in main() local
87 cstruc = structure = NULL; in main()
363 cstruc = NULL; in main()
366 cstruc = vrna_extract_record_rest_structure((const char **)rec_rest, 0, coptions); in main()
367 cstruc = vrna_cut_point_remove(cstruc, &cp); in main()
374 cl = (cstruc) ? (int)strlen(cstruc) : 0; in main()
383 if (cstruc) { in main()
393 vrna_constraints_add(vc, (const char *)cstruc, constraint_options); in main()
526 free(cstruc); in main()
541 rec_id = rec_sequence = orig_sequence = structure = cstruc = NULL; in main()
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| H A D | RNAplex.c | 1018 cstruc = vrna_read_line(sRNA); in main()
1019 if (cstruc != NULL) { in main()
1031 free(cstruc); in main()
1200 cstruc = vrna_read_line(sRNA); in main()
1201 if (cstruc != NULL) { in main()
1213 free(cstruc); in main()
1325 cstruc = vrna_read_line(stdin); in main()
1326 if (cstruc != NULL && (cstruc[0] == '>')) { in main()
1327 int dn3 = strlen(cstruc) - (n2 - 20); in main()
1329 strncat(structure, cstruc, n2 - 20); in main()
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| H A D | RNAcofold.c | 712 char *cstruc = NULL; in process_record() local
717 cstruc = vrna_extract_record_rest_structure((const char **)rec_rest, 0, coptions); in process_record()
718 cstruc = vrna_cut_point_remove(cstruc, &cp); in process_record()
725 cl = (cstruc) ? (int)strlen(cstruc) : 0; in process_record()
734 if (cstruc) { in process_record()
743 vrna_constraints_add(vc, (const char *)cstruc, constraint_options); in process_record()
746 free(cstruc); in process_record()
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| H A D | RNAfold.c | 1108 char *cstruc = NULL; in apply_constraints() local
1111 cstruc = vrna_extract_record_rest_structure((const char **)rec_rest, 0, coptions); in apply_constraints()
1112 unsigned int cl = (cstruc) ? strlen(cstruc) : 0; in apply_constraints()
1121 if (cstruc) { in apply_constraints()
1131 vrna_constraints_add(fc, (const char *)cstruc, constraint_options); in apply_constraints()
1134 free(cstruc); in apply_constraints()
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| H A D | RNAalifold.c | 1173 const char *cstruc; in apply_constraints() local
1177 cstruc = opt->constraint; in apply_constraints()
1183 } else if (cstruc) { in apply_constraints()
1185 unsigned int cl = strlen(cstruc); in apply_constraints()
1200 vrna_constraints_add(fc, cstruc, constraint_options); in apply_constraints()
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| H A D | RNAsnoop.c | 92 char *structure = NULL, *cstruc = NULL; in main() local
330 cstruc = vrna_read_line(sno); in main()
331 if (cstruc != NULL) { in main()
332 int dn3 = strlen(cstruc) - (length_s - 10); in main()
334 strcat(structure, cstruc); in main()
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| /dports/biology/viennarna/ViennaRNA-2.4.18/src/ViennaRNA/ |
| H A D | part_func_up.c | 589 char *cstruc, in pf_interact() argument
626 cc = get_ptypes_up(Seq, cstruc); in pf_interact()
665 if (fold_constrained && cstruc != NULL) { in pf_interact()
666 pos = strchr(cstruc, '|'); in pf_interact()
672 strncpy(i_long, cstruc, n1); in pf_interact()
674 strncpy(i_short, &cstruc[n1], n2); in pf_interact()
706 } else if (fold_constrained && cstruc == NULL) { in pf_interact()
711 pos = strchr(cstruc, '|'); in pf_interact()
806 if (fold_constrained && pos && cstruc[k - 1] == '|' && k > prev_k) in pf_interact()
815 if (fold_constrained && pos && cstruc[n1 + l - 1] == '|' && l < prev_l) in pf_interact()
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| H A D | part_func_up.h | 111 char *cstruc,
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| /dports/biology/viennarna/ViennaRNA-2.4.18/src/ViennaRNA/io/ |
| H A D | file_formats.h | 261 DEPRECATED(void vrna_extract_record_rest_constraint(char **cstruc,
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| H A D | file_formats.c | 496 vrna_extract_record_rest_constraint(char **cstruc, in vrna_extract_record_rest_constraint() argument
500 …*cstruc = vrna_extract_record_rest_structure(lines, 0, option | (option & VRNA_CONSTRAINT_MULTILIN… in vrna_extract_record_rest_constraint()
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| /dports/biology/viennarna/ViennaRNA-2.4.18/doc/latex/ |
| H A D | group__up__cofold.tex | 26 …__contrib}{pu\+\_\+contrib}} $\ast$p\+\_\+c2, int max\+\_\+w, char $\ast$cstruc, int incr3, int in…
69 …}} $\ast$}]{p\+\_\+c2, }\item[{int}]{max\+\_\+w, }\item[{char $\ast$}]{cstruc, }\item[{int}]{in…
79 …ngle{}p\+\_\+c2\textquotesingle{} to NULL. If variable \textquotesingle{}cstruc\textquotesingle{} …
97 {\em cstruc} & \\
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| H A D | part__func__up_8h.tex | 21 …__contrib}{pu\+\_\+contrib}} $\ast$p\+\_\+c2, int max\+\_\+w, char $\ast$cstruc, int incr3, int in…
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| H A D | part__func__up_8h_source.tex | 24 \DoxyCodeLine{00111 \textcolor{keywordtype}{char} *cstruc,}
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| /dports/biology/viennarna/ViennaRNA-2.4.18/src/Kinwalker/ |
| H A D | main.cpp | 16 char *structure=NULL, *cstruc=NULL; variable
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| /dports/science/code_saturne/code_saturne-7.1.0/src/base/ |
| H A D | ecrava.f90 | 582 write(cstruc(istr),'(I2.2)') istr
585 cstruc(istr) = cindst
589 rubriq = 'donnees_structure_'//cstruc(istr)
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| H A D | lecamx.f90 | 820 write(cstruc(istr),'(i2.2)') istr
823 cstruc(istr) = cindst
831 rubriq = 'donnees_structure_'//cstruc(istr)
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| /dports/textproc/texi2html/texi2html-5.0/test/formatting/res_info/center/ |
| H A D | center.info | 68 cstruc
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| /dports/textproc/texi2html/texi2html-5.0/test/formatting/ |
| H A D | center.texi | 73 @center @item cstruc
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| /dports/textproc/texi2html/texi2html-5.0/test/formatting/res/texi_center/ |
| H A D | center.texi.first | 73 @center @item cstruc
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| H A D | center.texi | 73 @center @item cstruc
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| /dports/textproc/texi2html/texi2html-5.0/test/formatting/res_all/texi_center/ |
| H A D | center.texi.first | 73 @center @item cstruc
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| H A D | center.texi | 73 @center @item cstruc
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| /dports/textproc/texi2html/texi2html-5.0/test/formatting/res_info/texi_center/ |
| H A D | center.texi | 73 @center @item cstruc
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| H A D | center.texi.first | 73 @center @item cstruc
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