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Searched refs:curr_homr (Results 1 – 3 of 3) sorted by relevance

/dports/biology/gemma/GEMMA-0.98.3/src/
H A Dmathfunc.cpp578 int curr_homr = (rare_copies - mid) / 2; in CalcHWE() local
579 int curr_homc = genotypes - curr_hets - curr_homr; in CalcHWE()
586 (4.0 * (curr_homr + 1.0) * (curr_homc + 1.0)); in CalcHWE()
591 curr_homr++; in CalcHWE()
596 curr_homr = (rare_copies - mid) / 2; in CalcHWE()
597 curr_homc = genotypes - curr_hets - curr_homr; in CalcHWE()
599 het_probs[curr_hets + 2] = het_probs[curr_hets] * 4.0 * curr_homr * in CalcHWE()
606 curr_homr--; in CalcHWE()
/dports/biology/vcftools/vcftools-0.1.16/src/cpp/
H A Dentry.cpp47 int curr_homr = (rare_copies - mid) / 2; in SNPHWE() local
48 int curr_homc = genotypes - curr_hets - curr_homr; in SNPHWE()
54 …s - 2] = het_probs[curr_hets] * curr_hets * (curr_hets - 1.0) / (4.0 * (curr_homr + 1.0) * (curr_h… in SNPHWE()
58 curr_homr++; in SNPHWE()
63 curr_homr = (rare_copies - mid) / 2; in SNPHWE()
64 curr_homc = genotypes - curr_hets - curr_homr; in SNPHWE()
67 …het_probs[curr_hets + 2] = het_probs[curr_hets] * 4.0 * curr_homr * curr_homc /((curr_hets + 2.0) … in SNPHWE()
71 curr_homr--; in SNPHWE()
/dports/biology/vcftools/vcftools-0.1.16/src/perl/
H A Dvcf-annotate718 my $curr_homr = ($rare_copies - $mid) / 2;
719 my $curr_homc = $genotypes - $curr_hets - $curr_homr;
725 …] = $het_probs[$curr_hets] * $curr_hets * ($curr_hets - 1.0) / (4.0 * ($curr_homr + 1.0) * ($curr_…
729 $curr_homr++;
733 $curr_homr = int(($rare_copies - $mid) / 2);
734 $curr_homc = $genotypes - $curr_hets - $curr_homr;
737 …$het_probs[$curr_hets + 2] = $het_probs[$curr_hets] * 4.0 * $curr_homr * $curr_homc /(($curr_hets …
741 $curr_homr--;