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Searched refs:currentSeqid (Results 1 – 18 of 18) sorted by relevance

/dports/biology/vcflib/vcflib-1.0.2/src/
H A Dvcfld.cpp348 string currentSeqid = "NA"; in main() local
362 if(currentSeqid != var.sequenceName){ in main()
364 …ns, targetAFS, backgroundAFS, external, derived, windowSize, target_h, background_h, currentSeqid); in main()
368 currentSeqid = var.sequenceName; in main()
430 …ns, targetAFS, backgroundAFS, external, derived, windowSize, target_h, background_h, currentSeqid); in main()
H A DsequenceDiversity.cpp380 string currentSeqid = "NA"; in main() local
392 if(currentSeqid != var.sequenceName){ in main()
394 …ns, targetAFS, backgroundAFS, external, derived, windowSize, target_h, background_h, currentSeqid); in main()
398 currentSeqid = var.sequenceName; in main()
469 …ns, targetAFS, backgroundAFS, external, derived, windowSize, target_h, background_h, currentSeqid); in main()
H A DxpEHH.cpp358 string currentSeqid = "NA"; in main() local
372 if(currentSeqid != var.sequenceName){ in main()
374 calc(haplotypes, nsamples, positions, afs, target_h, background_h, currentSeqid); in main()
378 currentSeqid = var.sequenceName; in main()
452 calc(haplotypes, nsamples, positions, afs, target_h, background_h, currentSeqid); in main()
H A DhapLrt.cpp515 string currentSeqid = "NA"; in main() local
532 if(currentSeqid != var.sequenceName){ in main()
534 calc(haplotypes, nsamples, positions, afs, iti, ibi, itot, currentSeqid); in main()
538 currentSeqid = var.sequenceName; in main()
631 calc(haplotypes, nsamples, positions, afs, iti, ibi, itot, currentSeqid); in main()
H A Dsmoother.cpp352 string currentSeqid = "NA"; in main() local
361 if(sline[opt.seqid] != currentSeqid){ in main()
375 currentSeqid = sline[opt.seqid]; in main()
H A DplotHaps.cpp325 string currentSeqid = "NA"; in main() local
/dports/biology/freebayes/freebayes-1.3.5/vcflib/src/
H A Dvcfld.cpp337 string currentSeqid = "NA"; in main() local
351 if(currentSeqid != var.sequenceName){ in main()
353 …ns, targetAFS, backgroundAFS, external, derived, windowSize, target_h, background_h, currentSeqid); in main()
357 currentSeqid = var.sequenceName; in main()
419 …ns, targetAFS, backgroundAFS, external, derived, windowSize, target_h, background_h, currentSeqid); in main()
H A DxpEHH.cpp349 string currentSeqid = "NA"; in main() local
363 if(currentSeqid != var.sequenceName){ in main()
365 calc(haplotypes, nsamples, positions, afs, target_h, background_h, currentSeqid); in main()
369 currentSeqid = var.sequenceName; in main()
443 calc(haplotypes, nsamples, positions, afs, target_h, background_h, currentSeqid); in main()
H A DsequenceDiversity.cpp370 string currentSeqid = "NA"; in main() local
382 if(currentSeqid != var.sequenceName){ in main()
384 …ns, targetAFS, backgroundAFS, external, derived, windowSize, target_h, background_h, currentSeqid); in main()
388 currentSeqid = var.sequenceName; in main()
459 …ns, targetAFS, backgroundAFS, external, derived, windowSize, target_h, background_h, currentSeqid); in main()
H A DhapLrt.cpp505 string currentSeqid = "NA"; in main() local
522 if(currentSeqid != var.sequenceName){ in main()
524 calc(haplotypes, nsamples, positions, afs, iti, ibi, itot, currentSeqid); in main()
528 currentSeqid = var.sequenceName; in main()
621 calc(haplotypes, nsamples, positions, afs, iti, ibi, itot, currentSeqid); in main()
H A Dsmoother.cpp341 string currentSeqid = "NA"; in main() local
350 if(sline[opt.seqid] != currentSeqid){ in main()
364 currentSeqid = sline[opt.seqid]; in main()
H A DplotHaps.cpp317 string currentSeqid = "NA"; in main() local
/dports/biology/freebayes/freebayes-1.3.5/vcflib-temp/src/
H A Dvcfld.cpp337 string currentSeqid = "NA"; in main() local
351 if(currentSeqid != var.sequenceName){ in main()
353 …ns, targetAFS, backgroundAFS, external, derived, windowSize, target_h, background_h, currentSeqid); in main()
357 currentSeqid = var.sequenceName; in main()
419 …ns, targetAFS, backgroundAFS, external, derived, windowSize, target_h, background_h, currentSeqid); in main()
H A DxpEHH.cpp349 string currentSeqid = "NA"; in main() local
363 if(currentSeqid != var.sequenceName){ in main()
365 calc(haplotypes, nsamples, positions, afs, target_h, background_h, currentSeqid); in main()
369 currentSeqid = var.sequenceName; in main()
443 calc(haplotypes, nsamples, positions, afs, target_h, background_h, currentSeqid); in main()
H A DsequenceDiversity.cpp370 string currentSeqid = "NA"; in main() local
382 if(currentSeqid != var.sequenceName){ in main()
384 …ns, targetAFS, backgroundAFS, external, derived, windowSize, target_h, background_h, currentSeqid); in main()
388 currentSeqid = var.sequenceName; in main()
459 …ns, targetAFS, backgroundAFS, external, derived, windowSize, target_h, background_h, currentSeqid); in main()
H A DhapLrt.cpp505 string currentSeqid = "NA"; in main() local
522 if(currentSeqid != var.sequenceName){ in main()
524 calc(haplotypes, nsamples, positions, afs, iti, ibi, itot, currentSeqid); in main()
528 currentSeqid = var.sequenceName; in main()
621 calc(haplotypes, nsamples, positions, afs, iti, ibi, itot, currentSeqid); in main()
H A Dsmoother.cpp341 string currentSeqid = "NA"; in main() local
350 if(sline[opt.seqid] != currentSeqid){ in main()
364 currentSeqid = sline[opt.seqid]; in main()
H A DplotHaps.cpp317 string currentSeqid = "NA"; in main() local