Searched refs:cut_act_pos1 (Results 1 – 4 of 4) sorted by relevance
| /dports/biology/seqan1/seqan-1.3.1/seqan/refinement/ |
| H A D | graph_algorithm_refine_inexact.h | 179 TValue cut_act_pos1,act_pos1; in _makeRefinedGraphEdges() local
181 _getCutBeginPos(ali_g,act_knot1,seq1,act_pos1,cut_act_pos1); in _makeRefinedGraphEdges()
182 TValue act_end_pos1 = cut_act_pos1 + fragmentLength(ali_g,act_knot1); in _makeRefinedGraphEdges()
239 cut_act_pos1 = act_pos1; in _makeRefinedGraphEdges()
240 act_end_pos1 = cut_act_pos1 + fragmentLength(ali_g,act_knot1); in _makeRefinedGraphEdges()
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| /dports/biology/seqan/seqan-library-2.4.0/include/seqan/graph_align/ |
| H A D | graph_algorithm_refine_inexact.h | 196 TPosition cut_act_pos1,act_pos1; in _makeRefinedGraphEdges() local
198 _getCutBeginPos(ali_g,act_knot1,seq1,end_pos1,act_pos1,cut_act_pos1); in _makeRefinedGraphEdges()
201 TPosition act_end_pos1 = cut_act_pos1 + fragmentLength(ali_g,act_knot1); in _makeRefinedGraphEdges()
270 cut_act_pos1 = act_pos1; in _makeRefinedGraphEdges()
271 act_end_pos1 = cut_act_pos1 + fragmentLength(ali_g,act_knot1); in _makeRefinedGraphEdges()
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| /dports/biology/seqan-apps/seqan-seqan-v2.4.0/include/seqan/graph_align/ |
| H A D | graph_algorithm_refine_inexact.h | 196 TPosition cut_act_pos1,act_pos1; in _makeRefinedGraphEdges() local
198 _getCutBeginPos(ali_g,act_knot1,seq1,end_pos1,act_pos1,cut_act_pos1); in _makeRefinedGraphEdges()
201 TPosition act_end_pos1 = cut_act_pos1 + fragmentLength(ali_g,act_knot1); in _makeRefinedGraphEdges()
270 cut_act_pos1 = act_pos1; in _makeRefinedGraphEdges()
271 act_end_pos1 = cut_act_pos1 + fragmentLength(ali_g,act_knot1); in _makeRefinedGraphEdges()
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| /dports/biology/pbseqan/seqan-21d95d737d8decb5cc3693b9065d81e831e7f57d/include/seqan/graph_align/ |
| H A D | graph_algorithm_refine_inexact.h | 201 TPosition cut_act_pos1,act_pos1; in _makeRefinedGraphEdges() local
203 _getCutBeginPos(ali_g,act_knot1,seq1,end_pos1,act_pos1,cut_act_pos1); in _makeRefinedGraphEdges()
206 TPosition act_end_pos1 = cut_act_pos1 + fragmentLength(ali_g,act_knot1); in _makeRefinedGraphEdges()
275 cut_act_pos1 = act_pos1; in _makeRefinedGraphEdges()
276 act_end_pos1 = cut_act_pos1 + fragmentLength(ali_g,act_knot1); in _makeRefinedGraphEdges()
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