Searched refs:cut_end_pos (Results 1 – 5 of 5) sorted by relevance
| /dports/biology/seqan/seqan-library-2.4.0/include/seqan/graph_align/ |
| H A D | graph_algorithm_refine_inexact.h | 101 TPosition & cut_end_pos) in _getCutEndPos() argument
105 cut_end_pos = end_pos; in _getCutEndPos()
108 cut_end_pos = _getClosestRefinedNeighbor(ali_g,end_knot,seq,end_pos); in _getCutEndPos()
109 … if(cut_end_pos <= act_begin_pos) end_knot = getNil<typename VertexDescriptor<TAliGraph>::Type>(); in _getCutEndPos()
112 end_knot = findVertex(ali_g,seq,cut_end_pos-1); in _getCutEndPos()
113 … SEQAN_ASSERT(cut_end_pos == fragmentBegin(ali_g,end_knot)+fragmentLength(ali_g,end_knot)); in _getCutEndPos()
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| /dports/biology/seqan-apps/seqan-seqan-v2.4.0/include/seqan/graph_align/ |
| H A D | graph_algorithm_refine_inexact.h | 101 TPosition & cut_end_pos) in _getCutEndPos() argument
105 cut_end_pos = end_pos; in _getCutEndPos()
108 cut_end_pos = _getClosestRefinedNeighbor(ali_g,end_knot,seq,end_pos); in _getCutEndPos()
109 … if(cut_end_pos <= act_begin_pos) end_knot = getNil<typename VertexDescriptor<TAliGraph>::Type>(); in _getCutEndPos()
112 end_knot = findVertex(ali_g,seq,cut_end_pos-1); in _getCutEndPos()
113 … SEQAN_ASSERT(cut_end_pos == fragmentBegin(ali_g,end_knot)+fragmentLength(ali_g,end_knot)); in _getCutEndPos()
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| /dports/biology/pbseqan/seqan-21d95d737d8decb5cc3693b9065d81e831e7f57d/include/seqan/graph_align/ |
| H A D | graph_algorithm_refine_inexact.h | 103 TPosition & cut_end_pos) in _getCutEndPos() argument
108 cut_end_pos = end_pos; in _getCutEndPos()
111 cut_end_pos = _getClosestRefinedNeighbor(ali_g,end_knot,seq,end_pos); in _getCutEndPos()
112 … if(cut_end_pos <= act_begin_pos) end_knot = getNil<typename VertexDescriptor<TAliGraph>::Type>(); in _getCutEndPos()
115 end_knot = findVertex(ali_g,seq,cut_end_pos-1); in _getCutEndPos()
116 … SEQAN_ASSERT(cut_end_pos == fragmentBegin(ali_g,end_knot)+fragmentLength(ali_g,end_knot)); in _getCutEndPos()
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| /dports/biology/seqan1/seqan-1.3.1/seqan/refinement/ |
| H A D | graph_algorithm_refine_inexact.h | 105 TValue & cut_end_pos) in _getCutEndPos() argument
110 cut_end_pos = end_pos; in _getCutEndPos()
113 cut_end_pos = _getClosestRefinedNeighbor(ali_g,end_knot,seq,end_pos); in _getCutEndPos()
114 end_knot = findVertex(ali_g,seq,cut_end_pos-1); in _getCutEndPos()
115 SEQAN_ASSERT_TRUE(cut_end_pos == fragmentBegin(ali_g,end_knot)+fragmentLength(ali_g,end_knot)); in _getCutEndPos()
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| H A D | refinement_generated_forwards.h | 199 …ptor<TAliGraph>::Type & end_knot, TValue seq, TValue end_pos, TValue & cut_end_pos); // "se…
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