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/dports/www/grafana8/grafana-8.3.6/vendor/gonum.org/v1/gonum/stat/
H A Droc.go56 if len(cutoffs) == 0 {
57 if cutoffs == nil || cap(cutoffs) < len(y)+1 {
60 cutoffs = cutoffs[:len(y)+1]
64 cutoffs[bin] = y[0]
70 cutoffs[bin] = u
73 cutoffs = cutoffs[:bin+2]
76 tmp := cutoffs
77 cutoffs = make([]float64, len(cutoffs))
78 copy(cutoffs, tmp)
88 for bin < len(cutoffs)-1 && y[i] >= cutoffs[bin] {
[all …]
H A Droc_test.go21 cutoffs []float64
51 cutoffs: []float64{-1, 2, 4, 6, 8},
59 cutoffs: []float64{-1, 1, 2, 3, 4, 5, 6, 7, 8},
68 cutoffs: []float64{-1, 2, 4, 6, 8},
100 cutoffs: []float64{-1, 2, 4, 6, 8},
117 cutoffs: []float64{-1, 2, 4, 6, 8},
148 cutoffs: []float64{-1, 2.5, 5, 7.5, 10},
163 cutoffs: []float64{-1, 2},
186 cutoffs: []float64{-1, 1},
208 cutoffs: []float64{-1, 2.5, 5, 7.5, 10},
[all …]
/dports/biology/ncbi-toolkit/ncbi/algo/blast/core/
H A Dblast_diagnostics.c43 sfree(diagnostics->cutoffs); in Blast_DiagnosticsFree()
70 if (diagnostics->cutoffs) { in Blast_DiagnosticsCopy()
71 memcpy((void*)retval->cutoffs, (void*)diagnostics->cutoffs, in Blast_DiagnosticsCopy()
74 sfree(diagnostics->cutoffs); in Blast_DiagnosticsCopy()
88 diagnostics->cutoffs = in Blast_DiagnosticsInit()
150 if (global->cutoffs && local->cutoffs) { in Blast_DiagnosticsUpdate()
151 global->cutoffs->x_drop_ungapped = local->cutoffs->x_drop_ungapped; in Blast_DiagnosticsUpdate()
152 global->cutoffs->x_drop_gap = local->cutoffs->x_drop_gap; in Blast_DiagnosticsUpdate()
153 global->cutoffs->x_drop_gap_final = local->cutoffs->x_drop_gap_final; in Blast_DiagnosticsUpdate()
154 global->cutoffs->ungapped_cutoff = local->cutoffs->ungapped_cutoff; in Blast_DiagnosticsUpdate()
[all …]
H A Dblast_parameters.c122 sfree(parameters->cutoffs); in BlastInitialWordParametersFree()
192 p->cutoffs = (BlastUngappedCutoffs *)calloc( in BlastInitialWordParametersNew()
217 p->cutoffs[context].x_dropoff_init = in BlastInitialWordParametersNew()
716 sfree(parameters->cutoffs); in BlastHitSavingParametersFree()
771 params->cutoffs = (BlastGappedCutoffs *)calloc( in BlastHitSavingParametersNew()
874 params->cutoffs[context].cutoff_score = new_cutoff; in BlastHitSavingParametersUpdate()
875 params->cutoffs[context].cutoff_score_max = new_cutoff; in BlastHitSavingParametersUpdate()
898 params->cutoffs[context].cutoff_score = new_cutoff; in BlastHitSavingParametersUpdate()
899 params->cutoffs[context].cutoff_score_max = new_cutoff; in BlastHitSavingParametersUpdate()
914 params->cutoffs[context].cutoff_score = INT4_MAX; in BlastHitSavingParametersUpdate()
[all …]
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/blast/core/
H A Dblast_diagnostics.c43 sfree(diagnostics->cutoffs); in Blast_DiagnosticsFree()
70 if (diagnostics->cutoffs) { in Blast_DiagnosticsCopy()
71 memcpy((void*)retval->cutoffs, (void*)diagnostics->cutoffs, in Blast_DiagnosticsCopy()
74 sfree(diagnostics->cutoffs); in Blast_DiagnosticsCopy()
88 diagnostics->cutoffs = in Blast_DiagnosticsInit()
150 if (global->cutoffs && local->cutoffs) { in Blast_DiagnosticsUpdate()
151 global->cutoffs->x_drop_ungapped = local->cutoffs->x_drop_ungapped; in Blast_DiagnosticsUpdate()
152 global->cutoffs->x_drop_gap = local->cutoffs->x_drop_gap; in Blast_DiagnosticsUpdate()
153 global->cutoffs->x_drop_gap_final = local->cutoffs->x_drop_gap_final; in Blast_DiagnosticsUpdate()
154 global->cutoffs->ungapped_cutoff = local->cutoffs->ungapped_cutoff; in Blast_DiagnosticsUpdate()
[all …]
H A Dblast_parameters.c122 sfree(parameters->cutoffs); in BlastInitialWordParametersFree()
192 p->cutoffs = (BlastUngappedCutoffs *)calloc( in BlastInitialWordParametersNew()
217 p->cutoffs[context].x_dropoff_init = in BlastInitialWordParametersNew()
720 sfree(parameters->cutoffs); in BlastHitSavingParametersFree()
775 params->cutoffs = (BlastGappedCutoffs *)calloc( in BlastHitSavingParametersNew()
878 params->cutoffs[context].cutoff_score = new_cutoff; in BlastHitSavingParametersUpdate()
879 params->cutoffs[context].cutoff_score_max = new_cutoff; in BlastHitSavingParametersUpdate()
902 params->cutoffs[context].cutoff_score = new_cutoff; in BlastHitSavingParametersUpdate()
903 params->cutoffs[context].cutoff_score_max = new_cutoff; in BlastHitSavingParametersUpdate()
918 params->cutoffs[context].cutoff_score = INT4_MAX; in BlastHitSavingParametersUpdate()
[all …]
/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/algo/blast/core/
H A Dblast_diagnostics.c43 sfree(diagnostics->cutoffs); in Blast_DiagnosticsFree()
70 if (diagnostics->cutoffs) { in Blast_DiagnosticsCopy()
71 memcpy((void*)retval->cutoffs, (void*)diagnostics->cutoffs, in Blast_DiagnosticsCopy()
74 sfree(diagnostics->cutoffs); in Blast_DiagnosticsCopy()
88 diagnostics->cutoffs = in Blast_DiagnosticsInit()
150 if (global->cutoffs && local->cutoffs) { in Blast_DiagnosticsUpdate()
151 global->cutoffs->x_drop_ungapped = local->cutoffs->x_drop_ungapped; in Blast_DiagnosticsUpdate()
152 global->cutoffs->x_drop_gap = local->cutoffs->x_drop_gap; in Blast_DiagnosticsUpdate()
153 global->cutoffs->x_drop_gap_final = local->cutoffs->x_drop_gap_final; in Blast_DiagnosticsUpdate()
154 global->cutoffs->ungapped_cutoff = local->cutoffs->ungapped_cutoff; in Blast_DiagnosticsUpdate()
[all …]
H A Dblast_parameters.c122 sfree(parameters->cutoffs); in BlastInitialWordParametersFree()
192 p->cutoffs = (BlastUngappedCutoffs *)calloc( in BlastInitialWordParametersNew()
217 p->cutoffs[context].x_dropoff_init = in BlastInitialWordParametersNew()
720 sfree(parameters->cutoffs); in BlastHitSavingParametersFree()
775 params->cutoffs = (BlastGappedCutoffs *)calloc( in BlastHitSavingParametersNew()
878 params->cutoffs[context].cutoff_score = new_cutoff; in BlastHitSavingParametersUpdate()
879 params->cutoffs[context].cutoff_score_max = new_cutoff; in BlastHitSavingParametersUpdate()
902 params->cutoffs[context].cutoff_score = new_cutoff; in BlastHitSavingParametersUpdate()
903 params->cutoffs[context].cutoff_score_max = new_cutoff; in BlastHitSavingParametersUpdate()
918 params->cutoffs[context].cutoff_score = INT4_MAX; in BlastHitSavingParametersUpdate()
[all …]
/dports/textproc/py-nltk/nltk-3.4.1/nltk/classify/
H A Dutil.py109 def __init__(self, cutoffs): argument
110 self.cutoffs = cutoffs.copy()
111 if 'min_ll' in cutoffs:
112 cutoffs['min_ll'] = -abs(cutoffs['min_ll'])
114 cutoffs['min_lldelta'] = abs(cutoffs['min_lldelta'])
120 cutoffs = self.cutoffs
122 if 'max_iter' in cutoffs and self.iter >= cutoffs['max_iter']:
129 if 'min_ll' in cutoffs or 'min_lldelta' in cutoffs:
130 if 'min_ll' in cutoffs and new_ll >= cutoffs['min_ll']:
140 if 'max_acc' in cutoffs or 'min_accdelta' in cutoffs:
[all …]
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/blast/unit_tests/api/
H A Dlinkhsp_unit_test.cpp667 sfree(cutoffs); in BOOST_AUTO_TEST_CASE()
692 sfree(cutoffs); in BOOST_AUTO_TEST_CASE()
717 sfree(cutoffs); in BOOST_AUTO_TEST_CASE()
744 sfree(cutoffs); in BOOST_AUTO_TEST_CASE()
772 sfree(cutoffs); in BOOST_AUTO_TEST_CASE()
800 sfree(cutoffs); in BOOST_AUTO_TEST_CASE()
816 AllCutoffScores* cutoffs = in BOOST_AUTO_TEST_CASE() local
819 sfree(cutoffs); in BOOST_AUTO_TEST_CASE()
839 sfree(cutoffs); in BOOST_AUTO_TEST_CASE()
866 sfree(cutoffs); in BOOST_AUTO_TEST_CASE()
[all …]
/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/algo/blast/unit_tests/api/
H A Dlinkhsp_unit_test.cpp667 sfree(cutoffs); in BOOST_AUTO_TEST_CASE()
692 sfree(cutoffs); in BOOST_AUTO_TEST_CASE()
717 sfree(cutoffs); in BOOST_AUTO_TEST_CASE()
744 sfree(cutoffs); in BOOST_AUTO_TEST_CASE()
772 sfree(cutoffs); in BOOST_AUTO_TEST_CASE()
800 sfree(cutoffs); in BOOST_AUTO_TEST_CASE()
816 AllCutoffScores* cutoffs = in BOOST_AUTO_TEST_CASE() local
819 sfree(cutoffs); in BOOST_AUTO_TEST_CASE()
839 sfree(cutoffs); in BOOST_AUTO_TEST_CASE()
866 sfree(cutoffs); in BOOST_AUTO_TEST_CASE()
[all …]
/dports/graphics/libjxl/libjxl-0.6.1/lib/jxl/
H A Dans_common.cc93 cutoffs[i] = distribution[i]; in InitAliasTable()
94 if (cutoffs[i] > entry_size) { in InitAliasTable()
96 } else if (cutoffs[i] < entry_size) { in InitAliasTable()
101 cutoffs[i] = 0; in InitAliasTable()
112 cutoffs[overfull_i] -= underfull_by; in InitAliasTable()
115 a[underfull_i].offsets1 = cutoffs[overfull_i]; in InitAliasTable()
118 if (cutoffs[overfull_i] < entry_size) { in InitAliasTable()
120 } else if (cutoffs[overfull_i] > entry_size) { in InitAliasTable()
128 if (cutoffs[i] == entry_size) { in InitAliasTable()
137 a[i].offsets1 -= cutoffs[i]; in InitAliasTable()
[all …]
/dports/www/firefox/firefox-99.0/third_party/jpeg-xl/lib/jxl/
H A Dans_common.cc93 cutoffs[i] = distribution[i]; in InitAliasTable()
94 if (cutoffs[i] > entry_size) { in InitAliasTable()
96 } else if (cutoffs[i] < entry_size) { in InitAliasTable()
101 cutoffs[i] = 0; in InitAliasTable()
112 cutoffs[overfull_i] -= underfull_by; in InitAliasTable()
115 a[underfull_i].offsets1 = cutoffs[overfull_i]; in InitAliasTable()
118 if (cutoffs[overfull_i] < entry_size) { in InitAliasTable()
120 } else if (cutoffs[overfull_i] > entry_size) { in InitAliasTable()
128 if (cutoffs[i] == entry_size) { in InitAliasTable()
137 a[i].offsets1 -= cutoffs[i]; in InitAliasTable()
[all …]
/dports/mail/thunderbird/thunderbird-91.8.0/third_party/jpeg-xl/lib/jxl/
H A Dans_common.cc93 cutoffs[i] = distribution[i]; in InitAliasTable()
94 if (cutoffs[i] > entry_size) { in InitAliasTable()
96 } else if (cutoffs[i] < entry_size) { in InitAliasTable()
101 cutoffs[i] = 0; in InitAliasTable()
112 cutoffs[overfull_i] -= underfull_by; in InitAliasTable()
115 a[underfull_i].offsets1 = cutoffs[overfull_i]; in InitAliasTable()
118 if (cutoffs[overfull_i] < entry_size) { in InitAliasTable()
120 } else if (cutoffs[overfull_i] > entry_size) { in InitAliasTable()
128 if (cutoffs[i] == entry_size) { in InitAliasTable()
137 a[i].offsets1 -= cutoffs[i]; in InitAliasTable()
[all …]
/dports/www/firefox-esr/firefox-91.8.0/third_party/jpeg-xl/lib/jxl/
H A Dans_common.cc93 cutoffs[i] = distribution[i]; in InitAliasTable()
94 if (cutoffs[i] > entry_size) { in InitAliasTable()
96 } else if (cutoffs[i] < entry_size) { in InitAliasTable()
101 cutoffs[i] = 0; in InitAliasTable()
112 cutoffs[overfull_i] -= underfull_by; in InitAliasTable()
115 a[underfull_i].offsets1 = cutoffs[overfull_i]; in InitAliasTable()
118 if (cutoffs[overfull_i] < entry_size) { in InitAliasTable()
120 } else if (cutoffs[overfull_i] > entry_size) { in InitAliasTable()
128 if (cutoffs[i] == entry_size) { in InitAliasTable()
137 a[i].offsets1 -= cutoffs[i]; in InitAliasTable()
[all …]
/dports/science/py-hiphive/hiphive-0.7.1/hiphive/core/
H A Dclusters.py14 def get_clusters(atoms, cutoffs, nPrim, multiplicity=True, argument
54 for order in cutoffs.orders:
59 for nbody in cutoffs.nbodies:
60 cutoff = cutoffs.max_nbody_cutoff(nbody)
63 for order in range(nbody, cutoffs.max_nbody_order(nbody) + 1):
67 if cutoff < cutoffs.get_cutoff(nbody=nbody, order=order):
81 clusters, cutoffs = [], []
101 cutoffs.append(np.max(distance_matrix[cluster, :][:, cluster]))
102 return clusters, cutoffs
/dports/misc/py-gluonnlp/gluon-nlp-0.10.0/scripts/language_model/transformer/
H A Dembedding.py66 def __init__(self, vocab_size: int, embed_size: int, units: int, cutoffs: List[int],
71 if cutoffs != sorted(cutoffs):
73 'Got {}, but expected {}'.format(cutoffs, sorted(cutoffs)))
74 if not cutoffs:
75 raise ValueError('cutoffs must not be empty. Got {}'.format(cutoffs))
76 if cutoffs[0] <= 0:
77 raise ValueError('The first cutoff value ({}) must be greater 0.'.format(cutoffs[0]))
78 if cutoffs[-1] >= vocab_size:
81 cutoffs[-1], vocab_size))
85 self._cutoffs = [0] + cutoffs + [vocab_size]
H A Dsoftmax.py173 self._cutoffs = [0] + cutoffs + [vocab_size]
184 if cutoffs != sorted(cutoffs):
186 'Got {}, but expected {}'.format(cutoffs, sorted(cutoffs)))
187 if not cutoffs:
188 raise ValueError('cutoffs must not be empty. Got {}'.format(cutoffs))
189 if cutoffs[0] <= 0:
191 if cutoffs[-1] >= vocab_size:
194 cutoffs[-1], vocab_size))
208 if len(tie_projections) != len(cutoffs) + 1:
212 tie_projections, cutoffs))
[all …]
/dports/misc/py-gluonnlp/gluon-nlp-0.10.0/scripts/tests/
H A Dtest_transformer_xl.py62 def test_adaptive_embedding(embed_size, units, cutoffs, div_val, hybridize): argument
65 cutoffs=cutoffs, div_val=div_val)
81 def test_adaptive_softmax(embed_size, units, cutoffs, div_val, tie_with_adaptive_embedding, argument
86 embed_size=embed_size, units=units, cutoffs=cutoffs, div_val=div_val)
91 cutoffs=cutoffs, div_val=div_val)
93 net = Net(tie_embeddings=True, tie_projections=[True] * (len(cutoffs) + 1),
127 def test_transformer_xl_model(embed_size, units, cutoffs, div_val, mem_len, hybridize): argument
131 embed_cutoffs=cutoffs, embed_div_val=div_val)
/dports/science/openkim-models/openkim-models-2021-01-28/model-drivers/Morse_EIP__MD_429561112321_002/
H A DMorse_EIP.c163 double * cutoffs; member
826 double * cutoffs; in refresh() local
845 cutoffs = buffer->cutoffs; in refresh()
869 = (cutoffs[indx] * cutoffs[indx]); in refresh()
907 cutoffs[indx], in refresh()
1042 double * cutoffs; in model_driver_create() local
1399 cutoffs, in model_driver_create()
1445 buffer->cutoffs = cutoffs; in model_driver_create()
1469 buffer->cutoffs, in model_driver_create()
1619 = (cutoffs[indx] * cutoffs[indx]); in model_driver_create()
[all …]
/dports/lang/yorick/yorick-y_2_2_04/gist/
H A Dtick60.c22 static GpReal cutoffs[N_CUTS]= { 1800., 720., 360., 180., 90., 30., 10. }; variable
31 GpReal delta= cutoffs[0]; in Base60Ticks()
36 finest<=cutoffs[N_CUTS-1] || finest>delta) return 1; in Base60Ticks()
38 for (i0=0 ; i0<N_CUTS && finest<=cutoffs[i0] ; i0++) delta= cutoffs[i0]; in Base60Ticks()
47 for (; i0<N_CUTS && finest<=cutoffs[i0] ; i0++) { in Base60Ticks()
50 if (finest>cutoffs[i0]) break; in Base60Ticks()
55 delta= cutoffs[i0]; in Base60Ticks()
/dports/science/py-hiphive/hiphive-0.7.1/hiphive/
H A Dcluster_space.py22 from .cutoffs import Cutoffs, CutoffMaximumBody, BaseClusterFilter
83 if isinstance(cutoffs, Cutoffs):
84 self._cutoffs = cutoffs
85 elif isinstance(cutoffs, list):
86 self._cutoffs = CutoffMaximumBody(cutoffs, len(cutoffs) + 1)
131 def cutoffs(self): member in ClusterSpace
255 if order not in self.cutoffs.orders:
310 n_rows = self.cutoffs.max_nbody
311 n_cols = self.cutoffs.max_order - 1
314 cutoff_matrix = self.cutoffs.cutoff_matrix
[all …]
/dports/science/siesta/siesta-4.1.5/Util/Scripting/old-python-interface/
H A Dcutoff.py20 cutoffs = Num.arange(100.0,801.0,100.0) variable
21 energy = 0.0*cutoffs
66 for i in range(len(cutoffs)):
67 cutoff = cutoffs[i]
78 p.add(biggles.Curve(cutoffs[:],energy[:]))
/dports/security/py-sequoia/sequoia-383133f6be990237044900a4df676488bf8dd71e/openpgp/src/policy/
H A Dcutofflist.rs104 pub(super) cutoffs: VecOrSlice<'static, Option<Timestamp>>, field
124 cutoffs: VecOrSlice::empty(), in reject_all()
140 if i >= self.cutoffs.len() { in set()
142 self.cutoffs.resize(i + 1, DEFAULT_POLICY) in set()
144 self.cutoffs[i] = cutoff; in set()
151 *self.cutoffs.get(i as usize).unwrap_or(&DEFAULT_POLICY) in cutoff()
196 cutoffs: VecOrSlice::Vec(Self::DEFAULTS.to_vec()),
238 cutoffs: VecOrSlice::Slice(&Self::DEFAULTS[..]),
/dports/security/sequoia/sequoia-383133f6be990237044900a4df676488bf8dd71e/openpgp/src/policy/
H A Dcutofflist.rs104 pub(super) cutoffs: VecOrSlice<'static, Option<Timestamp>>, field
124 cutoffs: VecOrSlice::empty(), in reject_all()
140 if i >= self.cutoffs.len() { in set()
142 self.cutoffs.resize(i + 1, DEFAULT_POLICY) in set()
144 self.cutoffs[i] = cutoff; in set()
151 *self.cutoffs.get(i as usize).unwrap_or(&DEFAULT_POLICY) in cutoff()
196 cutoffs: VecOrSlice::Vec(Self::DEFAULTS.to_vec()),
238 cutoffs: VecOrSlice::Slice(&Self::DEFAULTS[..]),

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