Searched refs:dPctId (Results 1 – 14 of 14) sorted by relevance
21 double dPctId = msa.GetPctIdentityPair(uSeqIndex1, uSeqIndex2); in ComputeDist() local25 return KimuraDist(dPctId); in ComputeDist()27 if (dPctId < 0.05) in ComputeDist()28 dPctId = 0.05; in ComputeDist()29 return -log(dPctId); in ComputeDist()
46 double KimuraDist(double dPctId) in KimuraDist() argument48 double p = 1 - dPctId; in KimuraDist()85 double PctIdToHeightKimura(double dPctId) in PctIdToHeightKimura() argument87 return KimuraDist(dPctId); in PctIdToHeightKimura()
7 extern double PctIdToMAFFTDist(double dPctId);15 double dPctId = msa.GetPctIdentityPair(uSeqIndex1, uSeqIndex2); in ComputeDist() local20 return PctIdToMAFFTDist(dPctId); in ComputeDist()
288 double PctIdToMAFFTDist(double dPctId) in PctIdToMAFFTDist() argument290 if (dPctId < 0.05) in PctIdToMAFFTDist()291 dPctId = 0.05; in PctIdToMAFFTDist()292 double dDist = -log(dPctId); in PctIdToMAFFTDist()296 double PctIdToHeightMAFFT(double dPctId) in PctIdToHeightMAFFT() argument298 return PctIdToMAFFTDist(dPctId); in PctIdToHeightMAFFT()
94 double PctIdToHeight(double dPctId);95 double PctIdToHeightKimura(double dPctId);96 double PctIdToHeightMAFFT(double dPctId);97 double PctIdToMAFFTDist(double dPctId);
36 double dPctId = msaOut.GetPctIdentityPair(0, 1); in DistPWKimura() local37 float f = (float) KimuraDist(dPctId); in DistPWKimura()
187 double PctIdToMAFFTDist(double dPctId);188 double KimuraDist(double dPctId);
279 double PctIdToMAFFTDist(double dPctId) in PctIdToMAFFTDist() argument281 if (dPctId < 0.05) in PctIdToMAFFTDist()282 dPctId = 0.05; in PctIdToMAFFTDist()283 double dDist = -log(dPctId); in PctIdToMAFFTDist()287 double PctIdToHeightMAFFT(double dPctId) in PctIdToHeightMAFFT() argument289 return PctIdToMAFFTDist(dPctId); in PctIdToHeightMAFFT()
87 double PctIdToHeight(double dPctId);88 double PctIdToHeightKimura(double dPctId);89 double PctIdToHeightMAFFT(double dPctId);90 double PctIdToMAFFTDist(double dPctId);
190 double PctIdToMAFFTDist(double dPctId);191 double KimuraDist(double dPctId);