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Searched refs:d_params (Results 1 – 25 of 55) sorted by relevance

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/dports/biology/diamond/diamond-2.0.13/src/lib/alp/
H A Dsls_alignment_evaluer.cpp236 d_params.sigma = d_params.gapless_alpha; in initGapless()
239 d_params.alpha_I = d_params.gapless_alpha; in initGapless()
242 d_params.alpha_J = d_params.gapless_alpha; in initGapless()
245 d_params.a_I = d_params.gapless_a; in initGapless()
248 d_params.a_J = d_params.gapless_a; in initGapless()
310 = (d_params.a_I + d_params.a_J) * 0.5; in initGapless()
312 d_params.a_error = (d_params.a_I_error in initGapless()
315 d_params.alpha = (d_params.alpha_I in initGapless()
615 = (d_params.a_I + d_params.a_J) * 0.5; in initGapped()
617 d_params.a_error = (d_params.a_I_error in initGapped()
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H A Dsls_alignment_evaluer.hpp156 return d_params.K*exp(-d_params.lambda*score_); in evaluePerArea()
161 return (d_params.lambda*score_-log(d_params.K))/log(2.0); in bitScore()
167 return d_params.d_params_flag; in isGood()
171 const ALP_set_of_parameters &parameters() const { return d_params; } in parameters()
203 ALP_set_of_parameters d_params;//set of Gumbel parameters member in Sls::AlignmentEvaluer
/dports/biology/mmseqs2/MMseqs2-13-45111/lib/alp/
H A Dsls_alignment_evaluer.cpp236 d_params.sigma = d_params.gapless_alpha; in initGapless()
239 d_params.alpha_I = d_params.gapless_alpha; in initGapless()
242 d_params.alpha_J = d_params.gapless_alpha; in initGapless()
245 d_params.a_I = d_params.gapless_a; in initGapless()
248 d_params.a_J = d_params.gapless_a; in initGapless()
310 = (d_params.a_I + d_params.a_J) * 0.5; in initGapless()
312 d_params.a_error = (d_params.a_I_error in initGapless()
315 d_params.alpha = (d_params.alpha_I in initGapless()
615 = (d_params.a_I + d_params.a_J) * 0.5; in initGapped()
617 d_params.a_error = (d_params.a_I_error in initGapped()
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H A Dsls_alignment_evaluer.hpp156 return d_params.K*exp(-d_params.lambda*score_); in evaluePerArea()
161 return (d_params.lambda*score_-logK)/log(2.0); in bitScore()
166 return (d_params.lambda*score_-log(d_params.K))/log(2.0); in bitScore()
172 return d_params.d_params_flag; in isGood()
176 const ALP_set_of_parameters &parameters() const { return d_params; } in parameters()
208 ALP_set_of_parameters d_params;//set of Gumbel parameters member in Sls::AlignmentEvaluer
/dports/science/rdkit/rdkit-Release_2021_03_5/Code/ForceField/MMFF/
H A DParams.h165 return ((std::find(d_params.begin(), d_params.end(), atomType) != in isMMFFAromatic()
166 d_params.end()) in isMMFFAromatic()
184 res = d_params.find(atomType); in operator()
212 res = d_params.find(atomType); in operator()
231 std::vector<MMFFProp> d_params; variable
245 res = d_params.find(atomType); in operator()
360 if (res1 != d_params.end()) { in operator()
428 if (res1 != d_params.end()) { in operator()
485 if (res1 != d_params.end()) { in operator()
706 if (res1 != d_params.end()) { in getMMFFStbnParams()
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H A DParams.cpp39 d_params.clear(); in MMFFAromCollection()
40 d_params.resize(mmffArom->size()); in MMFFAromCollection()
87 d_params[atomType] = mmffDefObj; in MMFFDefCollection()
89 d_params.push_back(mmffDefObj); in MMFFDefCollection()
473 d_params[atomType] = mmffPropObj; in MMFFPropCollection()
475 d_params.push_back(mmffPropObj); in MMFFPropCollection()
614 d_params[atomType] = mmffPBCIObj; in MMFFPBCICollection()
616 d_params.push_back(mmffPBCIObj); in MMFFPBCICollection()
772 d_params.push_back(mmffChgObj); in MMFFChgCollection()
1334 d_params.push_back(mmffBondObj); in MMFFBondCollection()
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/dports/dns/powerdns/pdns-4.5.2/pdns/
H A Darguments.cc40 return d_params.begin(); in begin()
45 return d_params.end(); in end()
50 return d_params[var]; in set()
61 for (const auto& i: d_params) in setDefaults()
74 for (const auto& i: d_params) in list()
230 return d_params[arg]; in operator []()
301 if (d_params[arg].empty()) in asNum()
328 if (d_params[arg].empty()) in asDouble()
347 return d_params.find(var) != d_params.end(); in parmIsset()
421 d_params[var] = val; in parseOne()
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/dports/multimedia/v4l_compat/linux-5.13-rc2/tools/perf/util/cs-etm-decoder/
H A Dcs-etm-decoder.c157 if (d_params->packet_printer == NULL) in cs_etm_decoder__init_def_logger_printing()
160 decoder->packet_printer = d_params->packet_printer; in cs_etm_decoder__init_def_logger_printing()
194 if (d_params->operation == CS_ETM_OPERATION_PRINT) { in cs_etm_decoder__init_raw_frame_logging()
218 struct cs_etm_decoder_params *d_params __maybe_unused, in cs_etm_decoder__init_raw_frame_logging()
652 if (d_params->operation == CS_ETM_OPERATION_PRINT) in cs_etm_decoder__create_etm_decoder()
655 else if (d_params->operation == CS_ETM_OPERATION_DECODE) in cs_etm_decoder__create_etm_decoder()
671 if ((!t_params) || (!d_params)) in cs_etm_decoder__new()
679 decoder->data = d_params->data; in cs_etm_decoder__new()
684 flags |= (d_params->fsyncs ? OCSD_DFRMTR_HAS_FSYNCS : 0); in cs_etm_decoder__new()
685 flags |= (d_params->hsyncs ? OCSD_DFRMTR_HAS_HSYNCS : 0); in cs_etm_decoder__new()
[all …]
/dports/multimedia/libv4l/linux-5.13-rc2/tools/perf/util/cs-etm-decoder/
H A Dcs-etm-decoder.c157 if (d_params->packet_printer == NULL) in cs_etm_decoder__init_def_logger_printing()
160 decoder->packet_printer = d_params->packet_printer; in cs_etm_decoder__init_def_logger_printing()
194 if (d_params->operation == CS_ETM_OPERATION_PRINT) { in cs_etm_decoder__init_raw_frame_logging()
218 struct cs_etm_decoder_params *d_params __maybe_unused, in cs_etm_decoder__init_raw_frame_logging()
652 if (d_params->operation == CS_ETM_OPERATION_PRINT) in cs_etm_decoder__create_etm_decoder()
655 else if (d_params->operation == CS_ETM_OPERATION_DECODE) in cs_etm_decoder__create_etm_decoder()
671 if ((!t_params) || (!d_params)) in cs_etm_decoder__new()
679 decoder->data = d_params->data; in cs_etm_decoder__new()
684 flags |= (d_params->fsyncs ? OCSD_DFRMTR_HAS_FSYNCS : 0); in cs_etm_decoder__new()
685 flags |= (d_params->hsyncs ? OCSD_DFRMTR_HAS_HSYNCS : 0); in cs_etm_decoder__new()
[all …]
/dports/multimedia/v4l-utils/linux-5.13-rc2/tools/perf/util/cs-etm-decoder/
H A Dcs-etm-decoder.c157 if (d_params->packet_printer == NULL) in cs_etm_decoder__init_def_logger_printing()
160 decoder->packet_printer = d_params->packet_printer; in cs_etm_decoder__init_def_logger_printing()
194 if (d_params->operation == CS_ETM_OPERATION_PRINT) { in cs_etm_decoder__init_raw_frame_logging()
218 struct cs_etm_decoder_params *d_params __maybe_unused, in cs_etm_decoder__init_raw_frame_logging()
652 if (d_params->operation == CS_ETM_OPERATION_PRINT) in cs_etm_decoder__create_etm_decoder()
655 else if (d_params->operation == CS_ETM_OPERATION_DECODE) in cs_etm_decoder__create_etm_decoder()
671 if ((!t_params) || (!d_params)) in cs_etm_decoder__new()
679 decoder->data = d_params->data; in cs_etm_decoder__new()
684 flags |= (d_params->fsyncs ? OCSD_DFRMTR_HAS_FSYNCS : 0); in cs_etm_decoder__new()
685 flags |= (d_params->hsyncs ? OCSD_DFRMTR_HAS_HSYNCS : 0); in cs_etm_decoder__new()
[all …]
/dports/lang/mono/mono-5.10.1.57/mcs/mcs/
H A Dlambda.cs65 AParametersCollection d_params = Delegate.GetParameters (delegateType); in ResolveParameters()
68 if (!VerifyExplicitParameters (ec, tic, delegateType, d_params)) in ResolveParameters()
78 if (!VerifyParameterCompatibility (ec, tic, delegateType, d_params, ec.IsInProbingMode)) in ResolveParameters()
82 for (int i = 0; i < d_params.Count; i++) { in ResolveParameters()
84 if ((d_params.FixedParameters[i].ModFlags & Parameter.Modifier.RefOutMask) != 0) in ResolveParameters()
87 TypeSpec d_param = d_params.Types [i]; in ResolveParameters()
/dports/science/rdkit/rdkit-Release_2021_03_5/Code/GraphMol/Substruct/
H A DSubstructMatch.cpp152 : d_query(query), d_mol(mol), d_params(ps) { in MolMatchFinalCheckFunctor()
153 if (d_params.useEnhancedStereo) { in MolMatchFinalCheckFunctor()
167 if (d_params.extraFinalCheck) { in operator ()()
173 if (!d_params.extraFinalCheck(d_mol, aids)) { in operator ()()
177 if (!d_params.useChirality) { in operator ()()
253 if (d_params.useEnhancedStereo) { in operator ()()
328 const SubstructMatchParameters &d_params; member in RDKit::detail::MolMatchFinalCheckFunctor
339 if (d_params.useChirality) { in operator ()()
357 const SubstructMatchParameters &d_params; member in RDKit::detail::AtomLabelFunctor
366 if (d_params.useChirality) { in operator ()()
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/dports/science/lammps/lammps-stable_29Sep2021/src/KOKKOS/
H A Dpair_sw_kokkos.cpp294 if (rsq >= d_params[ijparam].cutsq) continue; in operator ()()
322 if (rsq1 >= d_params[ijparam].cutsq) continue; in operator ()()
340 if (rsq2 >= d_params[ikparam].cutsq) continue; in operator ()()
342 threebody(d_params[ijparam],d_params[ikparam],d_params[ijkparam], in operator ()()
418 if (rsq >= d_params[ijparam].cutsq) continue; in operator ()()
444 if (rsq1 >= d_params[ijparam].cutsq) continue; in operator ()()
460 threebody(d_params[ijparam],d_params[ikparam],d_params[ijkparam], in operator ()()
525 if (rsq1 >= d_params[jiparam].cutsq) continue; in operator ()()
545 threebody(d_params[jiparam],d_params[jkparam],d_params[jikparam], in operator ()()
548 threebodyj(d_params[jiparam],d_params[jkparam],d_params[jikparam], in operator ()()
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H A Dpair_exp6_rx_kokkos.cpp1898 if (isite1 == d_params[iparam].ispecies || isite2 == d_params[iparam].ispecies) continue; in getMixingWeights()
1916 rm1_old = d_params[iparam].rm; in getMixingWeights()
1917 rm1 = d_params[iparam].rm; in getMixingWeights()
1933 rm2 = d_params[iparam].rm; in getMixingWeights()
1948 if (isite1 == d_params[iparam].ispecies || isite2 == d_params[iparam].ispecies) continue; in getMixingWeights()
1949 rmi = d_params[iparam].rm; in getMixingWeights()
1960 if (isite1 == d_params[jparam].ispecies || isite2 == d_params[jparam].ispecies) continue; in getMixingWeights()
1961 rmj = d_params[jparam].rm; in getMixingWeights()
2208 if (isite1 == d_params[iparam].ispecies || isite2 == d_params[iparam].ispecies) continue; in getMixingWeightsVect()
2287 if (isite1 == d_params[iparam].ispecies || isite2 == d_params[iparam].ispecies) continue; in getMixingWeightsVect()
[all …]
H A Dpair_vashishta_kokkos.cpp219 if (rsq < d_params[ijparam].cutsq) { in operator ()()
224 if (rsq < d_params[ijparam].cutsq2) { in operator ()()
285 twobody(d_params[ijparam],rsq,fpair,eflag,evdwl); in operator ()()
328 threebody(d_params[ijparam],d_params[ikparam],d_params[ijkparam], in operator ()()
404 twobody(d_params[ijparam],rsq,fpair,eflag,evdwl); in operator ()()
440 threebody(d_params[ijparam],d_params[ikparam],d_params[ijkparam], in operator ()()
521 threebody(d_params[jiparam],d_params[jkparam],d_params[jikparam], in operator ()()
524 threebodyj(d_params[jiparam],d_params[jkparam],d_params[jikparam], in operator ()()
637 d_params = k_params.template view<DeviceType>(); in setup_params()
/dports/net/tclsoap/tclsoap1.6.7/
H A DXMLRPC.tcl110 set d_params [dom::document createElement $d_root "params"]
111 set d_param [dom::document createElement $d_params "param"]
129 set d_params [dom::document createElement $d_root "params"]
132 set d_param [dom::document createElement $d_params "param"]
/dports/science/rdkit/rdkit-Release_2021_03_5/Code/GraphMol/Descriptors/
H A DCrippen.h126 ParamsVect::const_iterator begin() const { return d_params.begin(); }; in begin()
127 ParamsVect::const_iterator end() const { return d_params.end(); }; in end()
132 ParamsVect d_params; //!< the parameters
/dports/science/rdkit/rdkit-Release_2021_03_5/Code/ForceField/UFF/
H A DParams.h139 res = d_params.find(symbol); in operator()
140 if (res != d_params.end()) { in operator()
150 std::map<std::string, AtomicParams> d_params; //!< the parameter map variable
/dports/dns/powerdns/pdns-4.5.2/modules/pipebackend/
H A Dcoprocess.cc46 split(d_params, command, boost::is_any_of(" ")); in CoProcess()
48 d_argv.resize(d_params.size() + 1); in CoProcess()
49 d_argv[d_params.size()] = nullptr; in CoProcess()
51 for (size_t n = 0; n < d_params.size(); n++) { in CoProcess()
52 d_argv[n] = d_params[n].c_str(); in CoProcess()
/dports/science/rdkit/rdkit-Release_2021_03_5/Code/GraphMol/TautomerQuery/
H A DTautomerQuery.cpp77 const SubstructMatchParameters &d_params; member in RDKit::TautomerQueryMatcher
85 d_params(params), in TautomerQueryMatcher()
97 if (d_tautomerQuery.matchTautomer(mol, *tautomer, match, d_params)) { in match()
98 auto matchingTautomer = d_params.extraFinalCheck in match()
99 ? d_params.extraFinalCheck(mol, match) in match()
/dports/science/sparta/sparta-20Oct2021/src/KOKKOS/
H A Dcollide_vss_kokkos.cpp301 d_params = k_params.d_view; in init()
825 precoln.etrans = 0.5 * d_params(isp,jsp).mr * precoln.vr2; in setup_collision_kokkos()
982 double alpha_r = 1.0 / d_params(isp,jsp).alpha; in SCATTER_TwoBodyScattering()
1071 (1/(2.5-d_params(ip->ispecies,jp->ispecies).omega))); in EEXCHANGE_NonReactingEDisposal()
1185 double alpha_r = 1.0 / d_params(isp,jsp).alpha; in SCATTER_ThreeBodyScattering()
1254 aveomega = d_params(ip->ispecies,jp->ispecies).omega; in EEXCHANGE_ReactingEDisposal()
1263 …aveomega = (d_params(ip->ispecies,ip->ispecies).omega + d_params(jp->ispecies,jp->ispecies).omega + in EEXCHANGE_ReactingEDisposal()
1396 double rotphi = (1.0+d_params(isp,isp).rotc2/sqrt(Tr) + d_params(isp,isp).rotc3/Tr) in rotrel()
1397 / d_params(isp,isp).rotc1; in rotrel()
1408 double Tr = Ec /(boltz * (3.5-d_params(isp,isp).omega)); in vibrel()
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/dports/security/py-certbot-apache/certbot-apache-1.22.0/tests/
H A Dparsernode_util_test.py105 d_params = self._setup_directivenode()
106 d_params.pop("ancestor")
107 self.assertRaises(TypeError, util.directivenode_kwargs, d_params)
/dports/math/py-statsmodels/statsmodels-0.13.1/statsmodels/stats/tests/
H A Dtest_influence.py46 assert_allclose(infl.d_params, results_sas[:, 5:8] * res.bse.values, atol=1e-4)
71 assert_allclose(infl0.d_params, infl1.d_params, rtol=1e-9, atol=5e-9)
117 assert_allclose(infl.d_params[mask_low], diff_params[mask_low], atol=0.05)
227 assert_allclose(infl0.d_params, infl1.dfbeta, rtol=1e-9, atol=1e-14)
/dports/lang/vala/vala-0.48.18/codegen/
H A Dvalaccodedelegatemodule.vala217 var d_params = d.get_parameters ();
218 foreach (Parameter param in d_params) {
292 if (d_params.size == 0 || m.closure) {
296 arg = new CCodeIdentifier (get_ccode_name (d_params.get (0)));
315 arg = new CCodeIdentifier (get_ccode_name (d_params.get (i)));
316 if (d_params.get (i).variable_type is GenericType) {
326 if (get_ccode_array_null_terminated (d_params.get (i))) {
329 len_call.add_argument (new CCodeIdentifier (d_params.get (i).name));
331 } else if (!get_ccode_array_length (d_params.get (i))) {
334 clength = new CCodeIdentifier (get_variable_array_length_cname (d_params.get (i), dim));
[all …]
/dports/math/cvc4/CVC4-1.7/src/expr/
H A Ddatatype.h946 std::vector<Type> d_params; variable
1145 d_params(), in Datatype()
1163 d_params(params), in Datatype()
1184 inline bool Datatype::isParametric() const { return d_params.size() > 0; } in isParametric()
1185 inline size_t Datatype::getNumParameters() const { return d_params.size(); } in getNumParameters()
1189 CheckArgument(i < d_params.size(), i, in getParameter()
1191 return d_params[i]; in getParameter()
1197 return d_params; in getParameters()

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