/dports/biology/diamond/diamond-2.0.13/src/lib/alp/ |
H A D | sls_alignment_evaluer.cpp | 236 d_params.sigma = d_params.gapless_alpha; in initGapless() 239 d_params.alpha_I = d_params.gapless_alpha; in initGapless() 242 d_params.alpha_J = d_params.gapless_alpha; in initGapless() 245 d_params.a_I = d_params.gapless_a; in initGapless() 248 d_params.a_J = d_params.gapless_a; in initGapless() 310 = (d_params.a_I + d_params.a_J) * 0.5; in initGapless() 312 d_params.a_error = (d_params.a_I_error in initGapless() 315 d_params.alpha = (d_params.alpha_I in initGapless() 615 = (d_params.a_I + d_params.a_J) * 0.5; in initGapped() 617 d_params.a_error = (d_params.a_I_error in initGapped() [all …]
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H A D | sls_alignment_evaluer.hpp | 156 return d_params.K*exp(-d_params.lambda*score_); in evaluePerArea() 161 return (d_params.lambda*score_-log(d_params.K))/log(2.0); in bitScore() 167 return d_params.d_params_flag; in isGood() 171 const ALP_set_of_parameters ¶meters() const { return d_params; } in parameters() 203 ALP_set_of_parameters d_params;//set of Gumbel parameters member in Sls::AlignmentEvaluer
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/dports/biology/mmseqs2/MMseqs2-13-45111/lib/alp/ |
H A D | sls_alignment_evaluer.cpp | 236 d_params.sigma = d_params.gapless_alpha; in initGapless() 239 d_params.alpha_I = d_params.gapless_alpha; in initGapless() 242 d_params.alpha_J = d_params.gapless_alpha; in initGapless() 245 d_params.a_I = d_params.gapless_a; in initGapless() 248 d_params.a_J = d_params.gapless_a; in initGapless() 310 = (d_params.a_I + d_params.a_J) * 0.5; in initGapless() 312 d_params.a_error = (d_params.a_I_error in initGapless() 315 d_params.alpha = (d_params.alpha_I in initGapless() 615 = (d_params.a_I + d_params.a_J) * 0.5; in initGapped() 617 d_params.a_error = (d_params.a_I_error in initGapped() [all …]
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H A D | sls_alignment_evaluer.hpp | 156 return d_params.K*exp(-d_params.lambda*score_); in evaluePerArea() 161 return (d_params.lambda*score_-logK)/log(2.0); in bitScore() 166 return (d_params.lambda*score_-log(d_params.K))/log(2.0); in bitScore() 172 return d_params.d_params_flag; in isGood() 176 const ALP_set_of_parameters ¶meters() const { return d_params; } in parameters() 208 ALP_set_of_parameters d_params;//set of Gumbel parameters member in Sls::AlignmentEvaluer
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/dports/science/rdkit/rdkit-Release_2021_03_5/Code/ForceField/MMFF/ |
H A D | Params.h | 165 return ((std::find(d_params.begin(), d_params.end(), atomType) != in isMMFFAromatic() 166 d_params.end()) in isMMFFAromatic() 184 res = d_params.find(atomType); in operator() 212 res = d_params.find(atomType); in operator() 231 std::vector<MMFFProp> d_params; variable 245 res = d_params.find(atomType); in operator() 360 if (res1 != d_params.end()) { in operator() 428 if (res1 != d_params.end()) { in operator() 485 if (res1 != d_params.end()) { in operator() 706 if (res1 != d_params.end()) { in getMMFFStbnParams() [all …]
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H A D | Params.cpp | 39 d_params.clear(); in MMFFAromCollection() 40 d_params.resize(mmffArom->size()); in MMFFAromCollection() 87 d_params[atomType] = mmffDefObj; in MMFFDefCollection() 89 d_params.push_back(mmffDefObj); in MMFFDefCollection() 473 d_params[atomType] = mmffPropObj; in MMFFPropCollection() 475 d_params.push_back(mmffPropObj); in MMFFPropCollection() 614 d_params[atomType] = mmffPBCIObj; in MMFFPBCICollection() 616 d_params.push_back(mmffPBCIObj); in MMFFPBCICollection() 772 d_params.push_back(mmffChgObj); in MMFFChgCollection() 1334 d_params.push_back(mmffBondObj); in MMFFBondCollection() [all …]
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/dports/dns/powerdns/pdns-4.5.2/pdns/ |
H A D | arguments.cc | 40 return d_params.begin(); in begin() 45 return d_params.end(); in end() 50 return d_params[var]; in set() 61 for (const auto& i: d_params) in setDefaults() 74 for (const auto& i: d_params) in list() 230 return d_params[arg]; in operator []() 301 if (d_params[arg].empty()) in asNum() 328 if (d_params[arg].empty()) in asDouble() 347 return d_params.find(var) != d_params.end(); in parmIsset() 421 d_params[var] = val; in parseOne() [all …]
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/dports/multimedia/v4l_compat/linux-5.13-rc2/tools/perf/util/cs-etm-decoder/ |
H A D | cs-etm-decoder.c | 157 if (d_params->packet_printer == NULL) in cs_etm_decoder__init_def_logger_printing() 160 decoder->packet_printer = d_params->packet_printer; in cs_etm_decoder__init_def_logger_printing() 194 if (d_params->operation == CS_ETM_OPERATION_PRINT) { in cs_etm_decoder__init_raw_frame_logging() 218 struct cs_etm_decoder_params *d_params __maybe_unused, in cs_etm_decoder__init_raw_frame_logging() 652 if (d_params->operation == CS_ETM_OPERATION_PRINT) in cs_etm_decoder__create_etm_decoder() 655 else if (d_params->operation == CS_ETM_OPERATION_DECODE) in cs_etm_decoder__create_etm_decoder() 671 if ((!t_params) || (!d_params)) in cs_etm_decoder__new() 679 decoder->data = d_params->data; in cs_etm_decoder__new() 684 flags |= (d_params->fsyncs ? OCSD_DFRMTR_HAS_FSYNCS : 0); in cs_etm_decoder__new() 685 flags |= (d_params->hsyncs ? OCSD_DFRMTR_HAS_HSYNCS : 0); in cs_etm_decoder__new() [all …]
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/dports/multimedia/libv4l/linux-5.13-rc2/tools/perf/util/cs-etm-decoder/ |
H A D | cs-etm-decoder.c | 157 if (d_params->packet_printer == NULL) in cs_etm_decoder__init_def_logger_printing() 160 decoder->packet_printer = d_params->packet_printer; in cs_etm_decoder__init_def_logger_printing() 194 if (d_params->operation == CS_ETM_OPERATION_PRINT) { in cs_etm_decoder__init_raw_frame_logging() 218 struct cs_etm_decoder_params *d_params __maybe_unused, in cs_etm_decoder__init_raw_frame_logging() 652 if (d_params->operation == CS_ETM_OPERATION_PRINT) in cs_etm_decoder__create_etm_decoder() 655 else if (d_params->operation == CS_ETM_OPERATION_DECODE) in cs_etm_decoder__create_etm_decoder() 671 if ((!t_params) || (!d_params)) in cs_etm_decoder__new() 679 decoder->data = d_params->data; in cs_etm_decoder__new() 684 flags |= (d_params->fsyncs ? OCSD_DFRMTR_HAS_FSYNCS : 0); in cs_etm_decoder__new() 685 flags |= (d_params->hsyncs ? OCSD_DFRMTR_HAS_HSYNCS : 0); in cs_etm_decoder__new() [all …]
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/dports/multimedia/v4l-utils/linux-5.13-rc2/tools/perf/util/cs-etm-decoder/ |
H A D | cs-etm-decoder.c | 157 if (d_params->packet_printer == NULL) in cs_etm_decoder__init_def_logger_printing() 160 decoder->packet_printer = d_params->packet_printer; in cs_etm_decoder__init_def_logger_printing() 194 if (d_params->operation == CS_ETM_OPERATION_PRINT) { in cs_etm_decoder__init_raw_frame_logging() 218 struct cs_etm_decoder_params *d_params __maybe_unused, in cs_etm_decoder__init_raw_frame_logging() 652 if (d_params->operation == CS_ETM_OPERATION_PRINT) in cs_etm_decoder__create_etm_decoder() 655 else if (d_params->operation == CS_ETM_OPERATION_DECODE) in cs_etm_decoder__create_etm_decoder() 671 if ((!t_params) || (!d_params)) in cs_etm_decoder__new() 679 decoder->data = d_params->data; in cs_etm_decoder__new() 684 flags |= (d_params->fsyncs ? OCSD_DFRMTR_HAS_FSYNCS : 0); in cs_etm_decoder__new() 685 flags |= (d_params->hsyncs ? OCSD_DFRMTR_HAS_HSYNCS : 0); in cs_etm_decoder__new() [all …]
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/dports/lang/mono/mono-5.10.1.57/mcs/mcs/ |
H A D | lambda.cs | 65 AParametersCollection d_params = Delegate.GetParameters (delegateType); in ResolveParameters() 68 if (!VerifyExplicitParameters (ec, tic, delegateType, d_params)) in ResolveParameters() 78 if (!VerifyParameterCompatibility (ec, tic, delegateType, d_params, ec.IsInProbingMode)) in ResolveParameters() 82 for (int i = 0; i < d_params.Count; i++) { in ResolveParameters() 84 if ((d_params.FixedParameters[i].ModFlags & Parameter.Modifier.RefOutMask) != 0) in ResolveParameters() 87 TypeSpec d_param = d_params.Types [i]; in ResolveParameters()
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/dports/science/rdkit/rdkit-Release_2021_03_5/Code/GraphMol/Substruct/ |
H A D | SubstructMatch.cpp | 152 : d_query(query), d_mol(mol), d_params(ps) { in MolMatchFinalCheckFunctor() 153 if (d_params.useEnhancedStereo) { in MolMatchFinalCheckFunctor() 167 if (d_params.extraFinalCheck) { in operator ()() 173 if (!d_params.extraFinalCheck(d_mol, aids)) { in operator ()() 177 if (!d_params.useChirality) { in operator ()() 253 if (d_params.useEnhancedStereo) { in operator ()() 328 const SubstructMatchParameters &d_params; member in RDKit::detail::MolMatchFinalCheckFunctor 339 if (d_params.useChirality) { in operator ()() 357 const SubstructMatchParameters &d_params; member in RDKit::detail::AtomLabelFunctor 366 if (d_params.useChirality) { in operator ()() [all …]
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/dports/science/lammps/lammps-stable_29Sep2021/src/KOKKOS/ |
H A D | pair_sw_kokkos.cpp | 294 if (rsq >= d_params[ijparam].cutsq) continue; in operator ()() 322 if (rsq1 >= d_params[ijparam].cutsq) continue; in operator ()() 340 if (rsq2 >= d_params[ikparam].cutsq) continue; in operator ()() 342 threebody(d_params[ijparam],d_params[ikparam],d_params[ijkparam], in operator ()() 418 if (rsq >= d_params[ijparam].cutsq) continue; in operator ()() 444 if (rsq1 >= d_params[ijparam].cutsq) continue; in operator ()() 460 threebody(d_params[ijparam],d_params[ikparam],d_params[ijkparam], in operator ()() 525 if (rsq1 >= d_params[jiparam].cutsq) continue; in operator ()() 545 threebody(d_params[jiparam],d_params[jkparam],d_params[jikparam], in operator ()() 548 threebodyj(d_params[jiparam],d_params[jkparam],d_params[jikparam], in operator ()() [all …]
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H A D | pair_exp6_rx_kokkos.cpp | 1898 if (isite1 == d_params[iparam].ispecies || isite2 == d_params[iparam].ispecies) continue; in getMixingWeights() 1916 rm1_old = d_params[iparam].rm; in getMixingWeights() 1917 rm1 = d_params[iparam].rm; in getMixingWeights() 1933 rm2 = d_params[iparam].rm; in getMixingWeights() 1948 if (isite1 == d_params[iparam].ispecies || isite2 == d_params[iparam].ispecies) continue; in getMixingWeights() 1949 rmi = d_params[iparam].rm; in getMixingWeights() 1960 if (isite1 == d_params[jparam].ispecies || isite2 == d_params[jparam].ispecies) continue; in getMixingWeights() 1961 rmj = d_params[jparam].rm; in getMixingWeights() 2208 if (isite1 == d_params[iparam].ispecies || isite2 == d_params[iparam].ispecies) continue; in getMixingWeightsVect() 2287 if (isite1 == d_params[iparam].ispecies || isite2 == d_params[iparam].ispecies) continue; in getMixingWeightsVect() [all …]
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H A D | pair_vashishta_kokkos.cpp | 219 if (rsq < d_params[ijparam].cutsq) { in operator ()() 224 if (rsq < d_params[ijparam].cutsq2) { in operator ()() 285 twobody(d_params[ijparam],rsq,fpair,eflag,evdwl); in operator ()() 328 threebody(d_params[ijparam],d_params[ikparam],d_params[ijkparam], in operator ()() 404 twobody(d_params[ijparam],rsq,fpair,eflag,evdwl); in operator ()() 440 threebody(d_params[ijparam],d_params[ikparam],d_params[ijkparam], in operator ()() 521 threebody(d_params[jiparam],d_params[jkparam],d_params[jikparam], in operator ()() 524 threebodyj(d_params[jiparam],d_params[jkparam],d_params[jikparam], in operator ()() 637 d_params = k_params.template view<DeviceType>(); in setup_params()
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/dports/net/tclsoap/tclsoap1.6.7/ |
H A D | XMLRPC.tcl | 110 set d_params [dom::document createElement $d_root "params"] 111 set d_param [dom::document createElement $d_params "param"] 129 set d_params [dom::document createElement $d_root "params"] 132 set d_param [dom::document createElement $d_params "param"]
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/dports/science/rdkit/rdkit-Release_2021_03_5/Code/GraphMol/Descriptors/ |
H A D | Crippen.h | 126 ParamsVect::const_iterator begin() const { return d_params.begin(); }; in begin() 127 ParamsVect::const_iterator end() const { return d_params.end(); }; in end() 132 ParamsVect d_params; //!< the parameters
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/dports/science/rdkit/rdkit-Release_2021_03_5/Code/ForceField/UFF/ |
H A D | Params.h | 139 res = d_params.find(symbol); in operator() 140 if (res != d_params.end()) { in operator() 150 std::map<std::string, AtomicParams> d_params; //!< the parameter map variable
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/dports/dns/powerdns/pdns-4.5.2/modules/pipebackend/ |
H A D | coprocess.cc | 46 split(d_params, command, boost::is_any_of(" ")); in CoProcess() 48 d_argv.resize(d_params.size() + 1); in CoProcess() 49 d_argv[d_params.size()] = nullptr; in CoProcess() 51 for (size_t n = 0; n < d_params.size(); n++) { in CoProcess() 52 d_argv[n] = d_params[n].c_str(); in CoProcess()
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/dports/science/rdkit/rdkit-Release_2021_03_5/Code/GraphMol/TautomerQuery/ |
H A D | TautomerQuery.cpp | 77 const SubstructMatchParameters &d_params; member in RDKit::TautomerQueryMatcher 85 d_params(params), in TautomerQueryMatcher() 97 if (d_tautomerQuery.matchTautomer(mol, *tautomer, match, d_params)) { in match() 98 auto matchingTautomer = d_params.extraFinalCheck in match() 99 ? d_params.extraFinalCheck(mol, match) in match()
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/dports/science/sparta/sparta-20Oct2021/src/KOKKOS/ |
H A D | collide_vss_kokkos.cpp | 301 d_params = k_params.d_view; in init() 825 precoln.etrans = 0.5 * d_params(isp,jsp).mr * precoln.vr2; in setup_collision_kokkos() 982 double alpha_r = 1.0 / d_params(isp,jsp).alpha; in SCATTER_TwoBodyScattering() 1071 (1/(2.5-d_params(ip->ispecies,jp->ispecies).omega))); in EEXCHANGE_NonReactingEDisposal() 1185 double alpha_r = 1.0 / d_params(isp,jsp).alpha; in SCATTER_ThreeBodyScattering() 1254 aveomega = d_params(ip->ispecies,jp->ispecies).omega; in EEXCHANGE_ReactingEDisposal() 1263 …aveomega = (d_params(ip->ispecies,ip->ispecies).omega + d_params(jp->ispecies,jp->ispecies).omega + in EEXCHANGE_ReactingEDisposal() 1396 double rotphi = (1.0+d_params(isp,isp).rotc2/sqrt(Tr) + d_params(isp,isp).rotc3/Tr) in rotrel() 1397 / d_params(isp,isp).rotc1; in rotrel() 1408 double Tr = Ec /(boltz * (3.5-d_params(isp,isp).omega)); in vibrel() [all …]
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/dports/security/py-certbot-apache/certbot-apache-1.22.0/tests/ |
H A D | parsernode_util_test.py | 105 d_params = self._setup_directivenode() 106 d_params.pop("ancestor") 107 self.assertRaises(TypeError, util.directivenode_kwargs, d_params)
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/dports/math/py-statsmodels/statsmodels-0.13.1/statsmodels/stats/tests/ |
H A D | test_influence.py | 46 assert_allclose(infl.d_params, results_sas[:, 5:8] * res.bse.values, atol=1e-4) 71 assert_allclose(infl0.d_params, infl1.d_params, rtol=1e-9, atol=5e-9) 117 assert_allclose(infl.d_params[mask_low], diff_params[mask_low], atol=0.05) 227 assert_allclose(infl0.d_params, infl1.dfbeta, rtol=1e-9, atol=1e-14)
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/dports/lang/vala/vala-0.48.18/codegen/ |
H A D | valaccodedelegatemodule.vala | 217 var d_params = d.get_parameters (); 218 foreach (Parameter param in d_params) { 292 if (d_params.size == 0 || m.closure) { 296 arg = new CCodeIdentifier (get_ccode_name (d_params.get (0))); 315 arg = new CCodeIdentifier (get_ccode_name (d_params.get (i))); 316 if (d_params.get (i).variable_type is GenericType) { 326 if (get_ccode_array_null_terminated (d_params.get (i))) { 329 len_call.add_argument (new CCodeIdentifier (d_params.get (i).name)); 331 } else if (!get_ccode_array_length (d_params.get (i))) { 334 clength = new CCodeIdentifier (get_variable_array_length_cname (d_params.get (i), dim)); [all …]
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/dports/math/cvc4/CVC4-1.7/src/expr/ |
H A D | datatype.h | 946 std::vector<Type> d_params; variable 1145 d_params(), in Datatype() 1163 d_params(params), in Datatype() 1184 inline bool Datatype::isParametric() const { return d_params.size() > 0; } in isParametric() 1185 inline size_t Datatype::getNumParameters() const { return d_params.size(); } in getNumParameters() 1189 CheckArgument(i < d_params.size(), i, in getParameter() 1191 return d_params[i]; in getParameter() 1197 return d_params; in getParameters()
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