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/dports/biology/iqtree/IQ-TREE-2.0.6/pll/
H A Dmodels.c170 daa[j*20+i] = daa[i*20+j]; in putWAG()
1106 …daa[6*20+0] = 1.038545; daa[6*20+1] = 0.363970; daa[6*20+2] = 0.541712; daa[6*20+3] = 5.243870; da… in initProtMat()
1108 …daa[7*20+0] = 2.066040; daa[7*20+1] = 0.390192; daa[7*20+2] = 1.437645; daa[7*20+3] = 0.844926; da… in initProtMat()
1110 …daa[8*20+0] = 0.358858; daa[8*20+1] = 2.426601; daa[8*20+2] = 4.509238; daa[8*20+3] = 0.927114; da… in initProtMat()
1113 …daa[9*20+0] = 0.149830; daa[9*20+1] = 0.126991; daa[9*20+2] = 0.191503; daa[9*20+3] = 0.010690; da… in initProtMat()
1126 …daa[13*20+0] = 0.253701; daa[13*20+1] = 0.052722;daa[13*20+2] = 0.089525; daa[13*20+3] = 0.017416;… in initProtMat()
1129 …daa[14*20+0] = 1.177651; daa[14*20+1] = 0.332533;daa[14*20+2] = 0.161787; daa[14*20+3] = 0.394456;… in initProtMat()
1133 …daa[15*20+0] = 4.727182; daa[15*20+1] = 0.858151;daa[15*20+2] = 4.008358; daa[15*20+3] = 1.240275;… in initProtMat()
1137 …daa[16*20+0] = 2.139501; daa[16*20+1] = 0.578987;daa[16*20+2] = 2.000679; daa[16*20+3] = 0.425860;… in initProtMat()
1141 …daa[17*20+0] = 0.180717; daa[17*20+1] = 0.593607;daa[17*20+2] = 0.045376; daa[17*20+3] = 0.029890;… in initProtMat()
[all …]
/dports/biology/phyml/phyml-3.3.20200621/src/
H A Dinit.c1941 daa[1*20+ 0] = 0.2; daa[2*20+ 0] = 0.2; daa[2*20+ 1] = 0.2; daa[3*20+ 0] = 0.6; in Init_Qmat_MtArt()
1942 daa[3*20+ 1] = 4.3; daa[3*20+ 2] = 500.2; daa[4*20+ 0] = 253.5; daa[4*20+ 1] = 35.5; in Init_Qmat_MtArt()
1944 daa[5*20+ 2] = 261.8; daa[5*20+ 3] = 0.2; daa[5*20+ 4] = 0.2; daa[6*20+ 0] = 0.2; in Init_Qmat_MtArt()
1945 daa[6*20+ 1] = 0.2; daa[6*20+ 2] = 183.0; daa[6*20+ 3] = 861.8; daa[6*20+ 4] = 0.2; in Init_Qmat_MtArt()
1947 daa[7*20+ 3] = 12.5; daa[7*20+ 4] = 80.5; daa[7*20+ 5] = 2.6; daa[7*20+ 6] = 43.9; in Init_Qmat_MtArt()
1948 daa[8*20+ 0] = 0.2; daa[8*20+ 1] = 41.3; daa[8*20+ 2] = 179.5; daa[8*20+ 3] = 0.2; in Init_Qmat_MtArt()
1949 daa[8*20+ 4] = 12.4; daa[8*20+ 5] = 313.5; daa[8*20+ 6] = 15.2; daa[8*20+ 7] = 0.2; in Init_Qmat_MtArt()
1950 daa[9*20+ 0] = 25.7; daa[9*20+ 1] = 1.8; daa[9*20+ 2] = 21.3; daa[9*20+ 3] = 6.6; in Init_Qmat_MtArt()
1951 daa[9*20+ 4] = 63.0; daa[9*20+ 5] = 10.5; daa[9*20+ 6] = 6.8; daa[9*20+ 7] = 2.7; in Init_Qmat_MtArt()
1953 daa[10*20+ 3] = 1.2; daa[10*20+ 4] = 78.7; daa[10*20+ 5] = 16.3; daa[10*20+ 6] = 1.7; in Init_Qmat_MtArt()
[all …]
H A Dinit.h39 int Init_Qmat_DCMut(phydbl *daa,phydbl *pi);
40 int Init_Qmat_MtArt(phydbl *daa,phydbl *pi);
41 int Init_Qmat_HIVb(phydbl *daa,phydbl *pi);
42 int Init_Qmat_HIVw(phydbl *daa,phydbl *pi);
43 int Init_Qmat_JTT(phydbl *daa,phydbl *pi);
44 int Init_Qmat_MtREV(phydbl *daa,phydbl *pi);
45 int Init_Qmat_LG(phydbl *daa,phydbl *pi);
46 int Init_Qmat_WAG(phydbl *daa,phydbl *pi);
49 int Init_Qmat_VT(phydbl *daa,phydbl *pi);
52 int Init_Qmat_AB(phydbl *daa, phydbl *pi);
[all …]
/dports/biology/diamond/diamond-2.0.13/src/output/daa/
H A Dview.cpp62 View_fetcher(DAA_file &daa) : in View_fetcher()
63 daa(daa) in View_fetcher()
81 DAA_file &daa; member
88 if (format == Output_format::daa) in view_query()
117 View_fetcher query_buf(*daa); in view_worker()
136 DAA_file daa(config.daa_file); in view_daa() local
137 …score_matrix = ScoreMatrix(daa.score_matrix(), daa.gap_open_penalty(), daa.gap_extension_penalty()… in view_daa()
147 cfg.db_seqs = daa.db_seqs(); in view_daa()
165 …ormat->print_header(*writer.f_, daa.mode(), daa.score_matrix(), daa.gap_open_penalty(), daa.gap_ex… in view_daa()
177 …ormat->print_header(*writer.f_, daa.mode(), daa.score_matrix(), daa.gap_open_penalty(), daa.gap_ex… in view_daa()
[all …]
/dports/sysutils/daa2iso/src/
H A Ddaa2iso.c252 myfr(fdi, &daa, sizeof(daa)); in main()
253 daacrc = crc32((u8 *)&daa, sizeof(daa) - 4); in main()
285 if(((daa.version != 0x100) && (daa.version != 0x110)) || (daa.b1 != 1)) { in main()
290 daas_mem = daa.data_offset - daa.size_offset; in main()
308 daas_mem = daa.data_offset - daa.size_offset; in main()
395 daa.version, daa.b1, daa.b0, in main()
401 daa.hdata[0], daa.hdata[1], daa.hdata[2], daa.hdata[3], in main()
402 daa.hdata[4], daa.hdata[5], daa.hdata[6], daa.hdata[7], in main()
403 daa.hdata[8], daa.hdata[9], daa.hdata[10], daa.hdata[11], in main()
404 daa.hdata[12], daa.hdata[13], daa.hdata[14], daa.hdata[15], in main()
[all …]
/dports/graphics/leptonica/leptonica-1.76.0/src/
H A Ddnabasic.c1129 L_DNAA *daa; in l_dnaaCreate() local
1167 L_DNAA *daa; in l_dnaaCreateFull() local
1201 if (!daa) in l_dnaaTruncate()
1231 L_DNAA *daa; in l_dnaaDestroy() local
1274 if (!daa) in l_dnaaAddDna()
1294 daa->n++; in l_dnaaAddDna()
1310 if (!daa) in l_dnaaExtendArray()
1337 if (!daa) in l_dnaaGetCount()
1356 if (!daa) in l_dnaaGetDnaCount()
1379 if (!daa) in l_dnaaGetNumberCount()
[all …]
/dports/security/trousers/trousers-0.3.14_3/src/tspi/
H A DMakefile.in108 @TSS_BUILD_DAA_TRUE@ daa/daa_structs.c daa/daa_parameter.c daa/big_integer/bi_gmp.c \
208 daa/daa_verifier/verifier.c daa/daa_structs.c \
209 daa/daa_parameter.c daa/big_integer/bi_gmp.c \
212 daa/big_integer/bi.c daa/utils/list.c tsp_get_flags.c \
781 daa/libtspi_la-daa_structs.lo: daa/$(am__dirstamp) \
783 daa/libtspi_la-daa_parameter.lo: daa/$(am__dirstamp) \
1873 daa/libtspi_la-daa_structs.lo: daa/daa_structs.c
1915 daa/utils/libtspi_la-list.lo: daa/utils/list.c
2144 -rm -rf daa/.libs daa/_libs
2147 -rm -rf daa/daa_issuer/.libs daa/daa_issuer/_libs
[all …]
H A Dobj_daa.c32 struct tr_daa_obj *daa = calloc(1, sizeof(struct tr_daa_obj)); in obj_daa_add() local
34 if (daa == NULL) { in obj_daa_add()
39 if ((result = obj_list_add(&daa_list, tspContext, 0, daa, phObject))) { in obj_daa_add()
40 free(daa); in obj_daa_add()
50 struct tr_daa_obj *daa = (struct tr_daa_obj *)data; in daa_free() local
53 free(daa); in daa_free()
99 obj_daa_get_and_lock_data(TSS_HDAA hDaa, struct tr_daa_obj **daa) in obj_daa_get_and_lock_data() argument
105 *daa = obj->data; in obj_daa_get_and_lock_data()
/dports/misc/rump/buildrump.sh-b914579/src/sys/dev/dec/
H A Ddzkbd.c133 struct dzkm_attach_args *daa = aux; in dzkbd_match() local
136 if (cf->cf_loc[DZCF_LINE] == daa->daa_line) in dzkbd_match()
151 struct dzkm_attach_args *daa = aux; in dzkbd_attach() local
157 dz->sc_dz[daa->daa_line].dz_catch = dzkbd_input; in dzkbd_attach()
158 dz->sc_dz[daa->daa_line].dz_private = dzkbd; in dzkbd_attach()
159 ls = &dz->sc_dz[daa->daa_line]; in dzkbd_attach()
161 isconsole = (daa->daa_flags & DZKBD_CONSOLE); in dzkbd_attach()
H A Ddzms.c104 struct dzkm_attach_args *daa = aux; in dzms_match() local
107 if (cf->cf_loc[DZCF_LINE] == daa->daa_line) in dzms_match()
122 struct dzkm_attach_args *daa = aux; in dzms_attach() local
126 dz->sc_dz[daa->daa_line].dz_catch = dzms_input; in dzms_attach()
127 dz->sc_dz[daa->daa_line].dz_private = dzms; in dzms_attach()
128 ls = &dz->sc_dz[daa->daa_line]; in dzms_attach()
/dports/lang/fpc-source/fpc-3.2.2/tests/test/
H A Dtcase24.pp19 'aba'..'daa': i := 1;
30 'aba'..'daa': i := 1;
41 'aba'..'daa': i := 1;
52 'aba'..'daa': i := 1;
H A Dtcase40.pp19 'aba'..'daa': i := 1;
30 'aba'..'daa': i := 1;
41 'aba'..'daa': i := 1;
52 'aba'..'daa': i := 1;
H A Dtcase25.pp19 'a'..'daa': i := 1;
30 'a'..'daa': i := 1;
41 'a'..'daa': i := 1;
52 'a'..'daa': i := 1;
H A Dtcase41.pp19 'a'..'daa': i := 1;
30 'a'..'daa': i := 1;
41 'a'..'daa': i := 1;
52 'a'..'daa': i := 1;
H A Dtcase44.pp20 'a'..'daa':
48 'a'..'daa':
76 'a'..'daa':
104 'a'..'daa':
/dports/x11-toolkits/pyl-gtk2/pygtk-2.24.0/
H A DChangeLog.pre-2-01 2003-09-01 James Henstridge <james@daa.com.au>
7 2003-08-31 James Henstridge <james@daa.com.au>
13 2003-08-26 James Henstridge <james@daa.com.au>
27 2003-08-24 James Henstridge <james@daa.com.au>
52 2003-08-02 James Henstridge <james@daa.com.au>
65 2003-07-31 James Henstridge <james@daa.com.au>
77 2003-07-26 James Henstridge <james@daa.com.au>
82 2003-07-25 James Henstridge <james@daa.com.au>
89 2003-07-24 James Henstridge <james@daa.com.au>
116 2003-07-23 James Henstridge <james@daa.com.au>
[all …]
/dports/devel/libglade2/libglade-2.6.4/
H A DChangeLog294 2004-05-17 James Henstridge <james@daa.com.au>
451 2002-12-14 James Henstridge <james@daa.com.au>
458 2002-08-29 James Henstridge <james@daa.com.au>
464 2002-08-19 James Henstridge <james@daa.com.au>
495 2002-06-06 James Henstridge <james@daa.com.au>
503 2002-06-01 James Henstridge <james@daa.com.au>
516 2002-05-12 James Henstridge <james@daa.com.au>
526 2002-05-12 James Henstridge <james@daa.com.au>
545 2002-05-06 James Henstridge <james@daa.com.au>
556 2002-04-28 James Henstridge <james@daa.com.au>
[all …]
/dports/science/dalton/dalton-66052b3af5ea7225e31178bf9a8b031913c72190/DALTON/sirius/
H A Ddypc.F81 allocatable daa(:,:,:,:)
432 deallocate(daa)
1149 $ ,daa(nact,nact,nact,nact),
1219 s(ab,mu)=s(ab,mu)+0.5d0*(daa(ap,bp,a,b)+daa(ap
1323 s(ab,mu)=s(ab,mu)+0.5d0*(daa(ap,bp,a,b)+daa(ap
1825 call fillcm2(s,daa,nact)
1898 call fillcm2p(s,daa,nact)
1969 subroutine fillcm2(s,daa,nact)
1981 s(ij,kl)=daa(i,j,k,l)
1989 subroutine fillcm2p(s,daa,nact)
[all …]
/dports/science/xcrysden/xcrysden-1.6.2/Tcl/
H A DXcrysden_resources22 *Entry.background: #daa
24 *Text.background: #daa
25 *Listbox.background: #daa
68 *DataGridSubBlock*Entry.background: #daa
/dports/audio/praat/praat-6.2.03/melder/
H A DNUMinterpol.cpp70 double daa = NUMpi / (x - left + 1.0); in NUM_interpolate_sinc() local
74 double cosdaa = cos (daa); in NUM_interpolate_sinc()
75 double sindaa = sin (daa); in NUM_interpolate_sinc()
86 aa += daa; in NUM_interpolate_sinc()
97 daa = NUMpi / (right - x + 1.0); in NUM_interpolate_sinc()
101 cosdaa = cos (daa); in NUM_interpolate_sinc()
102 sindaa = sin (daa); in NUM_interpolate_sinc()
113 aa += daa; in NUM_interpolate_sinc()
/dports/biology/diamond/diamond-2.0.13/src/output/
H A Djoin_blocks.cpp148 if (*output_format != Output_format::daa) in JoinRecord()
239 if (f == Output_format::daa) in join_query()
290 if (*output_format != Output_format::daa && config.report_unaligned != 0) { in join_worker()
299 if (*f == Output_format::daa) in join_worker()
308 if (*f == Output_format::daa) in join_worker()
331 if (*output_format != Output_format::daa) in join_blocks()
356 if (*output_format != Output_format::daa && config.report_unaligned != 0) { in join_blocks()
367 if (*output_format != Output_format::daa) in join_blocks()
/dports/devel/llvm-cheri/llvm-project-37c49ff00e3eadce5d8703fdc4497f28458c64a8/llvm/test/tools/llvm-mca/X86/Atom/
H A Dresources-x86_32.s17 daa label
44 # CHECK-NEXT: 1 18 9.00 daa
68 # CHECK-NEXT: 9.00 9.00 daa
/dports/devel/llvm11/llvm-11.0.1.src/test/tools/llvm-mca/X86/Atom/
H A Dresources-x86_32.s17 daa label
44 # CHECK-NEXT: 1 18 9.00 daa
68 # CHECK-NEXT: 9.00 9.00 daa
/dports/devel/llvm-devel/llvm-project-f05c95f10fc1d8171071735af8ad3a9e87633120/llvm/test/tools/llvm-mca/X86/Atom/
H A Dresources-x86_32.s17 daa label
44 # CHECK-NEXT: 1 18 9.00 daa
68 # CHECK-NEXT: 9.00 9.00 daa
/dports/devel/llvm90/llvm-9.0.1.src/test/tools/llvm-mca/X86/Atom/
H A Dresources-x86_32.s17 daa label
44 # CHECK-NEXT: 1 18 9.00 daa
68 # CHECK-NEXT: 9.00 9.00 daa

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