Searched refs:databaseSuffix (Results 1 – 5 of 5) sorted by relevance
| /dports/biology/seqan1/seqan-1.3.1/seqan/seeds2/ |
| H A D | seeds_extension.h | 686 TDatabaseSuffix databaseSuffix = suffix(database, getEndDim1(seed)); in extendSeed() local
691 …_extendSeedGappedXDropOneDirection(seed, querySuffix, databaseSuffix, EXTEND_RIGHT, scoringScheme,… in extendSeed()
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| /dports/biology/seqan-apps/seqan-seqan-v2.4.0/include/seqan/seeds/ |
| H A D | seeds_extension.h | 823 TDatabaseSuffix databaseSuffix = suffix(database, endPositionH(seed)); in extendSeed() local
830 …_extendSeedGappedXDropOneDirection(seed, querySuffix, databaseSuffix, EXTEND_RIGHT, scoringScheme,… in extendSeed()
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| /dports/biology/seqan/seqan-library-2.4.0/include/seqan/seeds/ |
| H A D | seeds_extension.h | 823 TDatabaseSuffix databaseSuffix = suffix(database, endPositionH(seed)); in extendSeed() local
830 …_extendSeedGappedXDropOneDirection(seed, querySuffix, databaseSuffix, EXTEND_RIGHT, scoringScheme,… in extendSeed()
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| /dports/biology/pbseqan/seqan-21d95d737d8decb5cc3693b9065d81e831e7f57d/include/seqan/seeds/ |
| H A D | seeds_extension.h | 823 TDatabaseSuffix databaseSuffix = suffix(database, endPositionH(seed)); in extendSeed() local
830 …_extendSeedGappedXDropOneDirection(seed, querySuffix, databaseSuffix, EXTEND_RIGHT, scoringScheme,… in extendSeed()
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| /dports/biology/seqan-apps/seqan-seqan-v2.4.0/apps/splazers/ |
| H A D | razers_spliced.h | 841 TDatabaseSuffix databaseSuffix = suffix(inf, endPositionV(seed)); in extendMatch() local
842 …extScore = _extendSeedGappedXDropOneDirection(seed, databaseSuffix, querySuffix, EXTEND_RIGHT, sco… in extendMatch()
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