/dports/biology/ugene/ugene-40.1/src/corelibs/U2Core/src/datatype/ |
H A D | U2Type.cpp | 66 U2DbiRef::U2DbiRef(const U2DbiFactoryId &dbiFactoryId, const U2DbiId &dbiId) in U2DbiRef() argument 67 : dbiFactoryId(dbiFactoryId), dbiId(dbiId) { in U2DbiRef() 71 return !dbiFactoryId.isEmpty() && !dbiId.isEmpty(); in isValid() 79 return dbiFactoryId == r2.dbiFactoryId && dbiId == r2.dbiId; in operator ==() 83 return dbiFactoryId + dbiId < r2.dbiFactoryId + r2.dbiId; in operator <() 87 out << dbiRef.dbiFactoryId << dbiRef.dbiId; in operator <<() 93 in >> dbiRef.dbiId; in operator >>() 124 } else if (dbiRef.dbiId != other.dbiRef.dbiId) { in operator <() 125 return dbiRef.dbiId < other.dbiRef.dbiId; in operator <()
|
H A D | U2Type.h | 126 … U2DbiRef(const U2DbiFactoryId &dbiFactoryId = U2DbiFactoryId(), const U2DbiId &dbiId = U2DbiId()); 135 U2DbiId dbiId; variable 197 : U2Entity(id), dbiId(_dbId), version(v), trackModType(NoTrack) { in U2Object() 201 U2DbiId dbiId; variable 219 return qHash(QPair<U2DataId, U2DbiId>(obj.id, obj.dbiId)); in qHash()
|
H A D | U2RawData.h | 39 : U2Object(U2DataId(), dbiRef.dbiId, 0) { in U2RawData()
|
/dports/biology/ugene/ugene-40.1/src/corelibs/U2Gui/src/util/project/ |
H A D | ProjectUpdater.cpp | 55 valid[doc->getDbiRef().dbiId] = false; in invalidate() 60 CHECK(valid.value(doc->getDbiRef().dbiId, true), false); in takeData() 61 CHECK(data.contains(doc->getDbiRef().dbiId), false); in takeData() 62 result = data.take(doc->getDbiRef().dbiId); in takeData() 74 data.remove(doc->getDbiRef().dbiId); in removeDocument() 98 if (!valid.value(dbiRef.dbiId, true)) { in readData() 99 data.take(dbiRef.dbiId); in readData() 100 valid[dbiRef.dbiId] = true; in readData() 108 if (valid.value(dbiRef.dbiId, true)) { in readData() 109 data[dbiRef.dbiId] = update; in readData()
|
/dports/biology/ugene/ugene-40.1/src/corelibs/U2Formats/src/mysql_dbi/util/ |
H A D | MysqlDbiUtils.cpp | 89 bool MysqlDbiUtils::parseDbiUrl(const U2DbiId &dbiId, QString &host, int &port, QString &dbName) { in parseDbiUrl() argument 90 int sepIndex = dbiId.indexOf(":"); in parseDbiUrl() 94 host = dbiId.left(sepIndex); in parseDbiUrl() 96 sepIndex = dbiId.indexOf("/", sepIndex); in parseDbiUrl() 100 QString portString = dbiId.mid(host.length() + 1, sepIndex - host.length() - 1); in parseDbiUrl() 110 dbName = dbiId.right(dbiId.length() - sepIndex - 1); in parseDbiUrl()
|
H A D | MysqlHelpers.cpp | 186 quint64 dbiId = U2DbiUtils::toDbiId(val); in bindDataId() local 187 if (0 != dbiId) { in bindDataId() 188 query.bindValue(placeholder, dbiId); in bindDataId() 195 quint64 dbiId = U2DbiUtils::toDbiId(val); in addBindDataId() local 196 if (0 != dbiId) { in addBindDataId() 197 query.addBindValue(dbiId); in addBindDataId()
|
H A D | MysqlDbiUtils.h | 47 static bool parseDbiUrl(const U2DbiId &dbiId, QString &host, int &port, QString &dbName);
|
/dports/biology/ugene/ugene-40.1/src/corelibs/U2Core/src/dbi/ |
H A D | U2DbiRegistry.cpp | 107 coreLog.trace("Allocated tmp dbi: " + dbiRef.dbiId); in attachTmpDbi() 161 QString url = sessionDbiConnection->dbi->getDbiRef().dbiId; in shutdownSessionDbi() 171 if (QFile::exists(ref.dbiRef.dbiId)) { in deallocateTmpDbi() 172 QFile::remove(ref.dbiRef.dbiId); in deallocateTmpDbi() 208 ref.dbiId = cmdlineReg->getParameterValue(CMDLineCoreOptions::SESSION_DB); in useDatabaseFromCMDLine() 221 res.dbiId = getDatabaseFromCMDLine(os); in getDbiRef() 223 res.dbiId = createNewDatabase(alias, os); in getDbiRef() 285 const QString url = dbiFactory->id2Url(ref.dbiId).getURLString(); in createDbi() 501 return dbiFactory->id2Url(ref.dbiId).getURLString(); in getDbiUrlByRef() 517 bool U2DbiPool::isDbiFromMainThread(const QString &dbiId) { in isDbiFromMainThread() argument [all …]
|
H A D | U2AbstractDbi.h | 68 return dbiId; in getDbiId() 160 U2DbiId dbiId; variable
|
H A D | U2DbiRegistry.h | 146 static bool isDbiFromMainThread(const QString &dbiId);
|
/dports/biology/ugene/ugene-40.1/src/corelibs/U2Lang/src/model/ |
H A D | DbiDataStorage.cpp | 62 foreach (const U2DbiId &dbiId, dbiList.keys()) { in ~DbiDataStorage() 63 bool temporary = dbiList.value(dbiId); in ~DbiDataStorage() 65 if (QFile::exists(dbiId)) { in ~DbiDataStorage() 66 QFile::remove(dbiId); in ~DbiDataStorage() 250 if (connections.contains(dbiRef.dbiId)) { in getConnection() 251 return connections[dbiRef.dbiId]; in getConnection() 270 SAFE_POINT(!dbiList.contains(dbiRef.dbiId), in createTmpDbi() 277 dbiList[dbiRef.dbiId] = true; in createTmpDbi() 278 connections[dbiRef.dbiId] = con.take(); in createTmpDbi() 287 dbiList[dbiRef.dbiId] = false; in openDbi() [all …]
|
/dports/biology/ugene/ugene-40.1/src/corelibs/U2Formats/src/mysql_dbi/ |
H A D | MysqlCrossDatabaseReferenceDbi.cpp | 62 q.bindString(":dbi", reference.dataRef.dbiRef.dbiId); in createCrossReference() 85 res.dataRef.dbiRef.dbiId = q.getString(1); in getCrossReference() 102 q.bindString(":dbi", reference.dataRef.dbiRef.dbiId); in updateCrossReference()
|
H A D | MysqlAssemblyDbi.cpp | 78 qint64 dbiId = U2DbiUtils::toDbiId(assemblyId); in getAdapter() local 79 MysqlAssemblyAdapter *res = adaptersById.value(dbiId); in getAdapter() 104 adaptersById[dbiId] = res; in getAdapter() 216 assembly.dbiId = fakeObject.dbiId; in createAssemblyObject()
|
/dports/biology/ugene/ugene-40.1/src/corelibs/U2View/src/ov_assembly/ |
H A D | AssemblyModel.cpp | 301 Document *refDoc = prj->findDocumentByURL(crossRef.dataRef.dbiRef.dbiId); in setAssembly() 314 QString refUrl = crossRef.dataRef.dbiRef.dbiId; in setAssembly() 344 QString url = ref.dataRef.dbiRef.dbiId; in createLoadReferenceAndAddToProjectTask() 397 if ((ent.entityId == assembly.id) && (ent.dbiRef.dbiId == assembly.dbiId)) { in isAssemblyDoc() 439 if (ref.dataRef.dbiRef.dbiId == d->getURLString()) { in sl_docAdded() 465 Document *refDoc = AppContext::getProject()->findDocumentByURL(ref.dataRef.dbiRef.dbiId); in sl_referenceLoaded() 641 QFile f(assembly.dbiId); in checkPermissions() 646 …ing file:\n%1\nYou don't have enough rights to change file").arg(assembly.dbiId), QMessageBox::Ok,… in checkPermissions() 651 …It might happen because file \n%1\n is read only. If not try to reload file").arg(assembly.dbiId)); in checkPermissions()
|
/dports/biology/ugene/ugene-40.1/src/corelibs/U2Lang/src/model/url_attribute/ |
H A D | SharedDbUrlUtils.cpp | 89 return dbiRef.dbiFactoryId + DB_PROVIDER_SEP + dbiRef.dbiId; in createDbUrl() 108 …return dbiRef.dbiFactoryId + DB_PROVIDER_SEP + dbiRef.dbiId + DB_URL_SEP + QString::number(compati… in createDbFolderUrl() 148 …return dbiRef.dbiFactoryId + DB_PROVIDER_SEP + dbiRef.dbiId + DB_URL_SEP + objId2Str(objId, objNam… in createDbObjectUrl() 219 const QString dbUrl = getDbRefFromEntityUrl(url).dbiId; in getDbShortNameFromEntityUrl()
|
/dports/biology/ugene/ugene-40.1/src/corelibs/U2View/src/ov_msa/mca_reads/ |
H A D | McaAlternativeMutationsWidget.cpp | 112 mcaDbiObj.dbiId = mcaObject->getEntityRef().dbiRef.dbiId; in updateValuesFromDb()
|
/dports/biology/ugene/ugene-40.1/src/corelibs/U2Core/src/tasks/ |
H A D | ConnectSharedDatabaseTask.cpp | 61 return GUrl(dbiRef.dbiId, GUrl_Network); in getUrlFromRef()
|
H A D | CmdlineInOutTaskRunner.cpp | 82 return dbiRef.dbiFactoryId + ">" + dbiRef.dbiId; in toString()
|
/dports/biology/ugene/ugene-40.1/src/corelibs/U2Formats/src/mysql_dbi/util/upgraders/ |
H A D | MysqlUpgraderFrom_1_16_To_1_24.cpp | 115 const qint64 dbiId = getQuery.getInt64(0); in repackInfo() local 123 setQuery.bindInt64(":id", dbiId); in repackInfo()
|
/dports/biology/ugene/ugene-40.1/src/plugins/workflow_designer/src/library/ |
H A D | ExtractConsensusWorker.cpp | 101 …const SharedDbiDataHandler dbiId = data[BaseSlots::ASSEMBLY_SLOT().getId()].value<SharedDbiDataHan… in takeAssembly() local 102 const AssemblyObject *obj = StorageUtils::getAssemblyObject(context->getDataStorage(), dbiId); in takeAssembly()
|
H A D | ExtractAssemblyCoverageWorker.cpp | 104 …const SharedDbiDataHandler dbiId = data[BaseSlots::ASSEMBLY_SLOT().getId()].value<SharedDbiDataHan… in takeAssembly() local 105 const AssemblyObject *obj = StorageUtils::getAssemblyObject(context->getDataStorage(), dbiId); in takeAssembly()
|
/dports/biology/ugene/ugene-40.1/src/corelibs/U2Core/src/datatype/udr/ |
H A D | RawDataUdrSchema.cpp | 204 dstObject.dbiId = dstDbiRef.dbiId; in cloneObject()
|
/dports/biology/ugene/ugene-40.1/src/plugins/api_tests/src/core/dbi/ |
H A D | DbiTest.cpp | 76 ref.dbiId = dbUrl; in init()
|
/dports/biology/ugene/ugene-40.1/src/corelibs/U2Core/src/gobjects/ |
H A D | MultipleChromatogramAlignmentObject.cpp | 82 obj.dbiId = dstDbiRef.dbiId; in clone()
|
/dports/biology/ugene/ugene-40.1/src/corelibs/U2Formats/src/sqlite_dbi/ |
H A D | SQLiteObjectDbi.cpp | 349 object.dbiId = dbId; in getObjectFolders() 906 object.dbiId = dbi->getDbiId(); in createObject() 917 object.dbiId = dbi->getDbiId(); in getObject() 1049 q.bindString(3, reference.dataRef.dbiRef.dbiId); in createCrossReference() 1071 res.dataRef.dbiRef.dbiId = q.getString(1); in getCrossReference() 1084 q.bindString(2, reference.dataRef.dbiRef.dbiId); in updateCrossReference()
|