| /dports/biology/fasta/fasta/ |
| H A D | ag_stats.c | 37 if (!del_set) {*gdelval= -14; *ggapval=-2;} in init_stats()
41 if (!del_set) {*gdelval= -8; *ggapval=-2;} in init_stats()
45 if (!del_set) {*gdelval= -12; *ggapval=-2;} in init_stats()
49 if (!del_set) {*gdelval= -12; *ggapval=-2;} in init_stats()
53 if (!del_set) {*gdelval= -20; *ggapval=-3;} in init_stats()
57 if (!del_set) {*gdelval= -27; *ggapval=-4;} in init_stats()
61 if (!del_set) {*gdelval= -27; *ggapval=-4;} in init_stats()
65 if (!del_set) {*gdelval= -26; *ggapval=-4;} in init_stats()
69 if (!del_set) {*gdelval= -26; *ggapval=-4;} in init_stats()
73 if (!del_set) {*gdelval= -25; *ggapval=-4;} in init_stats()
[all …]
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| H A D | align.c | 31 int *gdelval, int *ggapval, int del_set, int gap_set);
229 case 'f': sscanf(optarg,"%d",&gdelval); del_set = 1; break; in initenv()
250 if (!standard_pam(smstr,&pam,&gdelval,&ggapval,del_set,gap_set) in initenv()
254 else {del_set = 1;} in initenv()
282 if (!del_set) gdelval = -16; in resetp()
284 if (!del_set) gdelval = -12; in resetp()
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| H A D | apam.c | 161 int *gdelval, int *ggapval, int del_set, int gap_set) { in standard_pam() argument
171 if (!del_set) *gdelval = std_pam_p->gdel; in standard_pam()
173 if (!del_set) *gdelval = std_pam_p->gdel - std_pam_p->ggap; in standard_pam()
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| H A D | lalign2.c | 36 extern int init_stats(char *pam_type, int *gdelval, int *ggapval, int del_set);
43 int *gdelval, int *ggapval, int del_set, int gap_set);
275 if (!have_stats) have_stats = init_stats(smptr,&gdelval,&ggapval,del_set); in main()
379 del_set=1; in initenv()
431 if (!standard_pam(smstr,&pam,&gdelval,&ggapval,del_set,gap_set) in initenv()
435 else {del_set = 1;} in initenv()
476 if (!del_set) gdelval = -16; in resetp()
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| H A D | upam.gbl | 10 int del_set=0;
309 extern int del_set, gap_set, shift_set;
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| /dports/biology/ugene/ugene-40.1/src/libs_3rdparty/samtools/src/samtools/ |
| H A D | bam_rmdup.c | 51 for (k = kh_begin(del_set); k < kh_end(del_set); ++k) in clear_del_set()
52 if (kh_exist(del_set, k)) in clear_del_set()
53 free((char*)kh_key(del_set, k)); in clear_del_set()
54 kh_clear(name, del_set); in clear_del_set()
99 khash_t(name) *del_set; in bam_rmdup_core()
102 del_set = kh_init(name); in bam_rmdup_core()
116 clear_del_set(del_set); in bam_rmdup_core()
153 if (k != kh_end(del_set)) { in bam_rmdup_core()
155 kh_del(name, del_set, k); in bam_rmdup_core()
173 clear_del_set(del_set); in bam_rmdup_core()
[all …]
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| /dports/biology/stringtie/stringtie-2.1.1/samtools-0.1.18/ |
| H A D | bam_rmdup.c | 49 for (k = kh_begin(del_set); k < kh_end(del_set); ++k) in clear_del_set()
50 if (kh_exist(del_set, k)) in clear_del_set()
51 free((char*)kh_key(del_set, k)); in clear_del_set()
52 kh_clear(name, del_set); in clear_del_set()
97 khash_t(name) *del_set; in bam_rmdup_core()
100 del_set = kh_init(name); in bam_rmdup_core()
114 clear_del_set(del_set); in bam_rmdup_core()
151 if (k != kh_end(del_set)) { in bam_rmdup_core()
153 kh_del(name, del_set, k); in bam_rmdup_core()
171 clear_del_set(del_set); in bam_rmdup_core()
[all …]
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| /dports/biology/seqan1/seqan-1.3.1/lib/samtools/ |
| H A D | bam_rmdup.c | 49 for (k = kh_begin(del_set); k < kh_end(del_set); ++k) in clear_del_set()
50 if (kh_exist(del_set, k)) in clear_del_set()
51 free((char*)kh_key(del_set, k)); in clear_del_set()
52 kh_clear(name, del_set); in clear_del_set()
97 khash_t(name) *del_set; in bam_rmdup_core()
100 del_set = kh_init(name); in bam_rmdup_core()
114 clear_del_set(del_set); in bam_rmdup_core()
151 if (k != kh_end(del_set)) { in bam_rmdup_core()
153 kh_del(name, del_set, k); in bam_rmdup_core()
171 clear_del_set(del_set); in bam_rmdup_core()
[all …]
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| /dports/multimedia/v4l_compat/linux-5.13-rc2/net/netfilter/ |
| H A D | xt_set.c | 220 info->del_set.u.compat.flags, 0, UINT_MAX, in set_target_v0()
250 info->del_set.index); in set_target_v0_checkentry()
268 compat_flags(&info->del_set); in set_target_v0_checkentry()
295 info->del_set.flags, 0, UINT_MAX, in set_target_v1()
325 info->del_set.index); in set_target_v1_checkentry()
332 info->del_set.dim > IPSET_DIM_MAX) { in set_target_v1_checkentry()
366 info->del_set.flags, 0, UINT_MAX, in set_target_v2()
398 info->del_set.flags, 0, UINT_MAX, in set_target_v3()
452 info->del_set.index); in set_target_v3_checkentry()
455 info->del_set.index); in set_target_v3_checkentry()
[all …]
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| /dports/multimedia/libv4l/linux-5.13-rc2/net/netfilter/ |
| H A D | xt_set.c | 220 info->del_set.u.compat.flags, 0, UINT_MAX, in set_target_v0()
250 info->del_set.index); in set_target_v0_checkentry()
268 compat_flags(&info->del_set); in set_target_v0_checkentry()
295 info->del_set.flags, 0, UINT_MAX, in set_target_v1()
325 info->del_set.index); in set_target_v1_checkentry()
332 info->del_set.dim > IPSET_DIM_MAX) { in set_target_v1_checkentry()
366 info->del_set.flags, 0, UINT_MAX, in set_target_v2()
398 info->del_set.flags, 0, UINT_MAX, in set_target_v3()
452 info->del_set.index); in set_target_v3_checkentry()
455 info->del_set.index); in set_target_v3_checkentry()
[all …]
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| /dports/multimedia/v4l-utils/linux-5.13-rc2/net/netfilter/ |
| H A D | xt_set.c | 220 info->del_set.u.compat.flags, 0, UINT_MAX, in set_target_v0()
250 info->del_set.index); in set_target_v0_checkentry()
268 compat_flags(&info->del_set); in set_target_v0_checkentry()
295 info->del_set.flags, 0, UINT_MAX, in set_target_v1()
325 info->del_set.index); in set_target_v1_checkentry()
332 info->del_set.dim > IPSET_DIM_MAX) { in set_target_v1_checkentry()
366 info->del_set.flags, 0, UINT_MAX, in set_target_v2()
398 info->del_set.flags, 0, UINT_MAX, in set_target_v3()
452 info->del_set.index); in set_target_v3_checkentry()
455 info->del_set.index); in set_target_v3_checkentry()
[all …]
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| /dports/biology/py-pysam/pysam-0.18.0/samtools/ |
| H A D | bam_rmdup.c | 89 for (k = kh_begin(del_set); k < kh_end(del_set); ++k) in clear_del_set()
90 if (kh_exist(del_set, k)) in clear_del_set()
92 kh_clear(name, del_set); in clear_del_set()
137 khash_t(name) *del_set = NULL; in bam_rmdup_core()
141 del_set = kh_init(name); in bam_rmdup_core()
143 if (!aux || !del_set || !b) { in bam_rmdup_core()
227 clear_del_set(del_set); in bam_rmdup_core()
228 kh_destroy(name, del_set); in bam_rmdup_core()
248 if (del_set) { in bam_rmdup_core()
249 clear_del_set(del_set); in bam_rmdup_core()
[all …]
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| H A D | bam_rmdup.c.pysam.c | 91 for (k = kh_begin(del_set); k < kh_end(del_set); ++k) in clear_del_set()
92 if (kh_exist(del_set, k)) in clear_del_set()
94 kh_clear(name, del_set); in clear_del_set()
139 khash_t(name) *del_set = NULL; in bam_rmdup_core()
143 del_set = kh_init(name); in bam_rmdup_core()
145 if (!aux || !del_set || !b) { in bam_rmdup_core()
229 clear_del_set(del_set); in bam_rmdup_core()
230 kh_destroy(name, del_set); in bam_rmdup_core()
250 if (del_set) { in bam_rmdup_core()
251 clear_del_set(del_set); in bam_rmdup_core()
[all …]
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| /dports/biology/samtools/samtools-1.14/ |
| H A D | bam_rmdup.c | 89 for (k = kh_begin(del_set); k < kh_end(del_set); ++k) in clear_del_set()
90 if (kh_exist(del_set, k)) in clear_del_set()
92 kh_clear(name, del_set); in clear_del_set()
137 khash_t(name) *del_set = NULL; in bam_rmdup_core()
141 del_set = kh_init(name); in bam_rmdup_core()
143 if (!aux || !del_set || !b) { in bam_rmdup_core()
227 clear_del_set(del_set); in bam_rmdup_core()
228 kh_destroy(name, del_set); in bam_rmdup_core()
248 if (del_set) { in bam_rmdup_core()
249 clear_del_set(del_set); in bam_rmdup_core()
[all …]
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| /dports/multimedia/v4l_compat/linux-5.13-rc2/include/uapi/linux/netfilter/ |
| H A D | xt_set.h | 36 struct xt_set_info_v0 del_set; member
54 struct xt_set_info del_set; member
61 struct xt_set_info del_set; member
79 struct xt_set_info del_set; member
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| /dports/multimedia/libv4l/linux-5.13-rc2/include/uapi/linux/netfilter/ |
| H A D | xt_set.h | 36 struct xt_set_info_v0 del_set; member
54 struct xt_set_info del_set; member
61 struct xt_set_info del_set; member
79 struct xt_set_info del_set; member
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| /dports/lang/zig/zig-0.9.0/lib/libc/include/any-linux-any/linux/netfilter/ |
| H A D | xt_set.h | 36 struct xt_set_info_v0 del_set; member
54 struct xt_set_info del_set; member
61 struct xt_set_info del_set; member
79 struct xt_set_info del_set; member
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| /dports/lang/zig-devel/zig-0.9.0/lib/libc/include/any-linux-any/linux/netfilter/ |
| H A D | xt_set.h | 36 struct xt_set_info_v0 del_set; member
54 struct xt_set_info del_set; member
61 struct xt_set_info del_set; member
79 struct xt_set_info del_set; member
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| /dports/multimedia/v4l-utils/linux-5.13-rc2/include/uapi/linux/netfilter/ |
| H A D | xt_set.h | 36 struct xt_set_info_v0 del_set; member
54 struct xt_set_info del_set; member
61 struct xt_set_info del_set; member
79 struct xt_set_info del_set; member
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| /dports/biology/fasta3/fasta-36.3.8/src/ |
| H A D | apam.c | 242 standard_pam(char *smstr, struct pstruct *ppst, int del_set, int gap_set) { in standard_pam() argument
258 if (!del_set) ppst->gdelval = std_pam_p->gdel+std_pam_p->ggap; in standard_pam()
260 if (!del_set) ppst->gdelval = std_pam_p->gdel; in standard_pam()
274 min_pam_bits(int n0_eff, double bit_thresh, struct pstruct *ppst, int del_set, int gap_set) { in min_pam_bits() argument
303 if (!del_set) ppst->gdelval = std_pam_p->gdel+std_pam_p->ggap; in min_pam_bits()
305 if (!del_set) ppst->gdelval = std_pam_p->gdel; in min_pam_bits()
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| /dports/devel/libfirm/libfirm-1.21.0/ir/ident/ |
| H A D | ident.c | 74 del_set(id_set); in finish_ident()
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| /dports/devel/libfirm/libfirm-1.21.0/ir/adt/ |
| H A D | pmap.c | 70 del_set(M2S(map)); in pmap_destroy()
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| /dports/devel/libfirm/libfirm-1.21.0/ir/ana/ |
| H A D | dfs.c | 209 del_set(dfs->nodes); in dfs_free()
210 del_set(dfs->edges); in dfs_free()
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| /dports/devel/libfirm/libfirm-1.21.0/ir/be/ |
| H A D | becopyheur.c | 510 del_set(qn->conflicts); in free_qnode()
511 del_set(qn->changed_nodes); in free_qnode()
602 del_set(curr->changed_nodes); in ou_optimize()
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| /dports/devel/libfirm/libfirm-1.21.0/include/libfirm/adt/ |
| H A D | set.h | 92 FIRM_API void del_set(set *set);
|