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/dports/biology/subread/subread-2.0.2-source/src/
H A Dcore-junction.c3258 int delta_one ; in finalise_explain_CIGAR() local
3259 …nt_section -> is_strand_jumped + current_section -> is_connected_to_large_side == 1) delta_one = 1; in finalise_explain_CIGAR()
3260 else delta_one = -1; in finalise_explain_CIGAR()
3268 delta_one += (next_section->read_pos_end - next_section-> read_pos_start - 1); in finalise_explain_CIGAR()
3270 delta_one -= (next_section->read_pos_end - next_section-> read_pos_start - 1); in finalise_explain_CIGAR()
3275 delta_one += (next_section->read_pos_end - next_section-> read_pos_start - 1); in finalise_explain_CIGAR()
3277 delta_one -= (next_section->read_pos_end - next_section-> read_pos_start - 1); in finalise_explain_CIGAR()
3283 movement -= event_after -> event_small_side - delta_one; in finalise_explain_CIGAR()