/dports/science/dalton/dalton-66052b3af5ea7225e31178bf9a8b031913c72190/DALTON/mlcc/ |
H A D | mlcc3_reordering.F90 | 84 offset_2 = dime**2*(c-1) + dime*(b-1) + a 118 offset_2 = dime**2*(c-1) + dime*(b-1) + a 152 offset_2 = dime**2*(c-1) + dime*(b-1) + a 186 offset_2 = dime**2*(c-1) + dime*(b-1) + a 221 offset_2 = dime**2*(c-1) + dime*(b-1) + a 400 inc_off = dime**2*(b-1) + dime*(a-1) + c 401 bca_off = dime**2*(c-1) + dime*(b-1) + a 402 bac_off = dime**2*(b-1) + dime*(c-1) + a 403 cba_off = dime**2*(c-1) + dime*(a-1) + b 482 inc_off = dime**2*(c-1) + dime*(a-1) + b [all …]
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/dports/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_7/ |
H A D | BuildA.m | 3 fc=zeros(dime(1)-1,dime(2)-1,dime(3)-1); 4 AxB=zeros(dime(1)-1,dime(2)-1,dime(3)-1); 5 AyB=zeros(dime(1)-1,dime(2)-1,dime(3)-1); 6 AzB=zeros(dime(1)-1,dime(2)-1,dime(3)-1); 50 for i=dime(1)-1:dime(1)-1 63 for j=dime(2)-1:dime(2)-1 75 for k=dime(3)-1:dime(3)-1 129 pe=(k-2)*(dime(1)-2)*(dime(2)-2)+(j-2)*(dime(1)-2)+1; 159 dcz=-(dime(1)-2)*(dime(2)-2); 162 pcy=-((dime(1)-2)*(dime(2)-3)); [all …]
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H A D | discretization.m | 17 charge=zeros(dime(1),dime(2),dime(3)); 43 eme=(khi-1)*(dime(1))*(dime(2))+(jhi-1)*(dime(1))+ihi; 45 eme=(khi-1)*(dime(1))*(dime(2))+(jlo-1)*(dime(1))+ihi; 47 eme=(klo-1)*(dime(1))*(dime(2))+(jlo-1)*(dime(1))+ihi; 49 eme=(khi-1)*(dime(1))*(dime(2))+(jhi-1)*(dime(1))+ilo; 51 eme=(khi-1)*(dime(1))*(dime(2))+(jlo-1)*(dime(1))+ilo; 53 eme=(klo-1)*(dime(1))*(dime(2))+(jhi-1)*(dime(1))+ihi; 55 eme=(klo-1)*(dime(1))*(dime(2))+(jhi-1)*(dime(1))+ilo; 57 eme=(klo-1)*(dime(1))*(dime(2))+(jlo-1)*(dime(1))+ilo; 65 for i=1:dime(1) [all …]
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H A D | MAPBS.m | 326 % MATLAB_pot(2:dime(1)-1,dime(2),dime(3))=potB(2:dime(1)-1,dime(2),dime(3)); 354 …MATLAB_pot(dime(1),dime(2),k)=(MATLAB_pot(dime(1)-1,dime(2),k)+MATLAB_pot(dime(1),dime(2)-1,k))*0.… 361 % MATLAB_pot(2:dime(1)-1,dime(2),dime(3))=potB(2:dime(1)-1,dime(2),dime(3)); 388 MATLAB_pot(dime(1),dime(2),k)=(potc(dime(1)-1,dime(2),k)+potc(dime(1),dime(2)-1,k))*0.5; 393 MATLAB_pot(i,dime(2),dime(3))=(potc(i,dime(2)-1,dime(3))+potc(i,dime(2),dime(3)))*0.5; 400 MATLAB_pot(dime(1),j,dime(3))=(potc(dime(1)-1,j,dime(3))+potc(dime(1),j,dime(3)-1))*0.5; 409 …MATLAB_pot(1,dime(2),dime(3))=(MATLAB_pot(2,dime(2),dime(3))+MATLAB_pot(1,dime(2)-1,dime(3))+MATLA… 410 …MATLAB_pot(dime(1),1,dime(3))=(MATLAB_pot(dime(1)-1,1,dime(3))+MATLAB_pot(dime(1),2,dime(3))+MATLA… 411 …MATLAB_pot(dime(1),dime(2),1)=(MATLAB_pot(dime(1)-1,dime(2),1)+MATLAB_pot(dime(1),dime(2)-1,1)+MAT… 412 …ATLAB_pot(dime(1),dime(2),dime(3))=(MATLAB_pot(dime(1)-1,dime(2),dime(3))+MATLAB_pot(dime(1),dime(… [all …]
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/dports/science/afni/afni-AFNI_21.3.16/src/ |
H A D | mri_write_analyze.c | 49 swap_2(&pntr->dime.dim[0]) ; 50 swap_2(&pntr->dime.dim[1]) ; 121 hdr.dime.dim[1] = im->nx ; hdr.dime.pixdim[1] = im->dx ; in mri_write_analyze() 122 hdr.dime.dim[2] = im->ny ; hdr.dime.pixdim[2] = im->dy ; in mri_write_analyze() 123 hdr.dime.dim[3] = im->nz ; hdr.dime.pixdim[3] = im->dz ; in mri_write_analyze() 124 hdr.dime.dim[4] = im->nt ; hdr.dime.pixdim[4] = im->dt ; in mri_write_analyze() 125 hdr.dime.dim[5] = im->nu ; hdr.dime.pixdim[5] = im->du ; in mri_write_analyze() 126 hdr.dime.dim[6] = im->nv ; hdr.dime.pixdim[6] = im->dv ; in mri_write_analyze() 127 hdr.dime.dim[7] = im->nw ; hdr.dime.pixdim[7] = im->dw ; in mri_write_analyze() 152 hdr.dime.glmin = 0.0 ; in mri_write_analyze() [all …]
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H A D | mayo_analyze.c | 34 if(hdr.dime.dim[0] < 0 || hdr.dime.dim[0] > 15){ in main() 69 strncpy(string,hdr->dime.vox_units,4); in ShowHdr() 74 strncpy(string,hdr->dime.cal_units,8); in ShowHdr() 155 swap_short(&pntr->dime.dim[0]) ; in swap_hdr() 156 swap_short(&pntr->dime.dim[1]) ; in swap_hdr() 157 swap_short(&pntr->dime.dim[2]) ; in swap_hdr() 158 swap_short(&pntr->dime.dim[3]) ; in swap_hdr() 159 swap_short(&pntr->dime.dim[4]) ; in swap_hdr() 160 swap_short(&pntr->dime.dim[5]) ; in swap_hdr() 184 swap_long(&pntr->dime.glmax) ; in swap_hdr() [all …]
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/dports/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_5/ |
H A D | BuildA.m | 3 fc=zeros(dime(1)-1,dime(2)-1,dime(3)-1); 4 AxB=zeros(dime(1)-1,dime(2)-1,dime(3)-1); 5 AyB=zeros(dime(1)-1,dime(2)-1,dime(3)-1); 6 AzB=zeros(dime(1)-1,dime(2)-1,dime(3)-1); 27 for i=2:dime(1)-1 43 for i=dime(1)-1:dime(1)-1 52 for j=dime(2)-1:dime(2)-1 61 for k=dime(3)-1:dime(3)-1 99 pe=(k-2)*(dime(1)-2)*(dime(2)-2)+(j-2)*(dime(1)-2)+i-1; 114 d=[0 -1 -(dime(1)-2) -(dime(1)-2)*(dime(2)-2)]; [all …]
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H A D | discretization.m | 17 charge=zeros(dime(1),dime(2),dime(3)); 43 eme=(khi-1)*(dime(1))*(dime(2))+(jhi-1)*(dime(1))+ihi; 45 eme=(khi-1)*(dime(1))*(dime(2))+(jlo-1)*(dime(1))+ihi; 47 eme=(klo-1)*(dime(1))*(dime(2))+(jlo-1)*(dime(1))+ihi; 49 eme=(khi-1)*(dime(1))*(dime(2))+(jhi-1)*(dime(1))+ilo; 51 eme=(khi-1)*(dime(1))*(dime(2))+(jlo-1)*(dime(1))+ilo; 53 eme=(klo-1)*(dime(1))*(dime(2))+(jhi-1)*(dime(1))+ihi; 55 eme=(klo-1)*(dime(1))*(dime(2))+(jhi-1)*(dime(1))+ilo; 57 eme=(klo-1)*(dime(1))*(dime(2))+(jlo-1)*(dime(1))+ilo; 65 for i=1:dime(1) [all …]
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H A D | BoundaryCondition.m | 12 gxcf=zeros(dime(2),dime(3),2); 13 gycf=zeros(dime(1),dime(3),2); 14 gzcf=zeros(dime(1),dime(2),2); 15 potB=zeros(dime(1),dime(2),dime(3)); 16 BC=[1 dime(1);1 dime(2); 1 dime(3)]; 20 for j=1:dime(2) 21 for k=1:dime(3) 35 for i=1:dime(1) 36 for k=1:dime(3) 49 for i=1:dime(1) [all …]
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/dports/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_6/ |
H A D | BuildA.m | 3 fc=zeros(dime(1)-1,dime(2)-1,dime(3)-1); 4 AxB=zeros(dime(1)-1,dime(2)-1,dime(3)-1); 5 AyB=zeros(dime(1)-1,dime(2)-1,dime(3)-1); 6 AzB=zeros(dime(1)-1,dime(2)-1,dime(3)-1); 27 for i=2:dime(1)-1 43 for i=dime(1)-1:dime(1)-1 52 for j=dime(2)-1:dime(2)-1 61 for k=dime(3)-1:dime(3)-1 99 pe=(k-2)*(dime(1)-2)*(dime(2)-2)+(j-2)*(dime(1)-2)+i-1; 114 d=[0 -1 -(dime(1)-2) -(dime(1)-2)*(dime(2)-2)]; [all …]
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H A D | discretization.m | 17 charge=zeros(dime(1),dime(2),dime(3)); 43 eme=(khi-1)*(dime(1))*(dime(2))+(jhi-1)*(dime(1))+ihi; 45 eme=(khi-1)*(dime(1))*(dime(2))+(jlo-1)*(dime(1))+ihi; 47 eme=(klo-1)*(dime(1))*(dime(2))+(jlo-1)*(dime(1))+ihi; 49 eme=(khi-1)*(dime(1))*(dime(2))+(jhi-1)*(dime(1))+ilo; 51 eme=(khi-1)*(dime(1))*(dime(2))+(jlo-1)*(dime(1))+ilo; 53 eme=(klo-1)*(dime(1))*(dime(2))+(jhi-1)*(dime(1))+ihi; 55 eme=(klo-1)*(dime(1))*(dime(2))+(jhi-1)*(dime(1))+ilo; 57 eme=(klo-1)*(dime(1))*(dime(2))+(jlo-1)*(dime(1))+ilo; 65 for i=1:dime(1) [all …]
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H A D | BoundaryCondition.m | 12 gxcf=zeros(dime(2),dime(3),2); 13 gycf=zeros(dime(1),dime(3),2); 14 gzcf=zeros(dime(1),dime(2),2); 15 potB=zeros(dime(1),dime(2),dime(3)); 16 BC=[1 dime(1);1 dime(2); 1 dime(3)]; 20 for j=1:dime(2) 21 for k=1:dime(3) 35 for i=1:dime(1) 36 for k=1:dime(3) 49 for i=1:dime(1) [all …]
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/dports/science/minc2/minc-release-2.2.00/conversion/ana2mnc/doc/ |
H A D | show_hdr.c | 24 if(hdr.dime.dim[0] < 0 || hdr.dime.dim[0] > 15) in main() 119 swap_short(&pntr->dime.dim[0]) ; in swap_hdr() 120 swap_short(&pntr->dime.dim[1]) ; in swap_hdr() 121 swap_short(&pntr->dime.dim[2]) ; in swap_hdr() 122 swap_short(&pntr->dime.dim[3]) ; in swap_hdr() 123 swap_short(&pntr->dime.dim[4]) ; in swap_hdr() 124 swap_short(&pntr->dime.dim[5]) ; in swap_hdr() 125 swap_short(&pntr->dime.dim[6]) ; in swap_hdr() 126 swap_short(&pntr->dime.dim[7]) ; in swap_hdr() 146 swap_long(&pntr->dime.glmax) ; in swap_hdr() [all …]
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H A D | make_hdr.c | 36 hdr.dime.vox_offset = 0.0; in main() 37 hdr.dime.funused1 = 0.0; in main() 38 hdr.dime.funused2 = 0.0; in main() 39 hdr.dime.funused3 = 0.0; in main() 40 hdr.dime.cal_max = 0.0; in main() 41 hdr.dime.cal_min = 0.0; in main() 44 hdr.dime.datatype = -1; in main() 54 if(hdr.dime.datatype <= 0) in main() 93 hdr.dime.vox_offset = 0.0; in main() 113 hdr.dime.cal_max = 0.0; in main() [all …]
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/dports/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_3/ |
H A D | BuildA.m | 3 fc=zeros(dime(1)-1,dime(2)-1,dime(3)-1); 4 AxB=zeros(dime(1)-1,dime(2)-1,dime(3)-1); 5 AyB=zeros(dime(1)-1,dime(2)-1,dime(3)-1); 6 AzB=zeros(dime(1)-1,dime(2)-1,dime(3)-1); 27 for i=2:dime(1)-1 43 for i=dime(1)-1:dime(1)-1 52 for j=dime(2)-1:dime(2)-1 61 for k=dime(3)-1:dime(3)-1 101 pe=(k-2)*(dime(1)-2)*(dime(2)-2)+(j-2)*(dime(1)-2)+i-1; 116 d=[0 -1 -(dime(1)-2) -(dime(1)-2)*(dime(2)-2)]; [all …]
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H A D | discretization.m | 21 charge=zeros(dime(1),dime(2),dime(3)); 46 eme=(khi-1)*(dime(1))*(dime(2))+(jhi-1)*(dime(1))+ihi; 48 eme=(khi-1)*(dime(1))*(dime(2))+(jlo-1)*(dime(1))+ihi; 50 eme=(klo-1)*(dime(1))*(dime(2))+(jlo-1)*(dime(1))+ihi; 52 eme=(khi-1)*(dime(1))*(dime(2))+(jhi-1)*(dime(1))+ilo; 54 eme=(khi-1)*(dime(1))*(dime(2))+(jlo-1)*(dime(1))+ilo; 56 eme=(klo-1)*(dime(1))*(dime(2))+(jhi-1)*(dime(1))+ihi; 58 eme=(klo-1)*(dime(1))*(dime(2))+(jhi-1)*(dime(1))+ilo; 60 eme=(klo-1)*(dime(1))*(dime(2))+(jlo-1)*(dime(1))+ilo; 68 for i=1:dime(1) [all …]
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/dports/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_4/ |
H A D | BuildA.m | 3 fc=zeros(dime(1)-1,dime(2)-1,dime(3)-1); 4 AxB=zeros(dime(1)-1,dime(2)-1,dime(3)-1); 5 AyB=zeros(dime(1)-1,dime(2)-1,dime(3)-1); 6 AzB=zeros(dime(1)-1,dime(2)-1,dime(3)-1); 27 for i=2:dime(1)-1 43 for i=dime(1)-1:dime(1)-1 52 for j=dime(2)-1:dime(2)-1 61 for k=dime(3)-1:dime(3)-1 101 pe=(k-2)*(dime(1)-2)*(dime(2)-2)+(j-2)*(dime(1)-2)+i-1; 116 d=[0 -1 -(dime(1)-2) -(dime(1)-2)*(dime(2)-2)]; [all …]
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H A D | discretization.m | 21 charge=zeros(dime(1),dime(2),dime(3)); 46 eme=(khi-1)*(dime(1))*(dime(2))+(jhi-1)*(dime(1))+ihi; 48 eme=(khi-1)*(dime(1))*(dime(2))+(jlo-1)*(dime(1))+ihi; 50 eme=(klo-1)*(dime(1))*(dime(2))+(jlo-1)*(dime(1))+ihi; 52 eme=(khi-1)*(dime(1))*(dime(2))+(jhi-1)*(dime(1))+ilo; 54 eme=(khi-1)*(dime(1))*(dime(2))+(jlo-1)*(dime(1))+ilo; 56 eme=(klo-1)*(dime(1))*(dime(2))+(jhi-1)*(dime(1))+ihi; 58 eme=(klo-1)*(dime(1))*(dime(2))+(jhi-1)*(dime(1))+ilo; 60 eme=(klo-1)*(dime(1))*(dime(2))+(jlo-1)*(dime(1))+ilo; 68 for i=1:dime(1) [all …]
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/dports/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_0/ |
H A D | BuildA.m | 3 fc=zeros(dime(1)-1,dime(2)-1,dime(3)-1); 4 AxB=zeros(dime(1)-1,dime(2)-1,dime(3)-1); 5 AyB=zeros(dime(1)-1,dime(2)-1,dime(3)-1); 6 AzB=zeros(dime(1)-1,dime(2)-1,dime(3)-1); 28 for i=2:dime(1)-1 44 for i=dime(1)-1:dime(1)-1 53 for j=dime(2)-1:dime(2)-1 62 for k=dime(3)-1:dime(3)-1 100 pe=(k-2)*(dime(1)-2)*(dime(2)-2)+(j-2)*(dime(1)-2)+i-1; 115 d=[0 -1 -(dime(1)-2) -(dime(1)-2)*(dime(2)-2)]; [all …]
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/dports/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_1/ |
H A D | BuildA.m | 3 fc=zeros(dime(1)-1,dime(2)-1,dime(3)-1); 4 AxB=zeros(dime(1)-1,dime(2)-1,dime(3)-1); 5 AyB=zeros(dime(1)-1,dime(2)-1,dime(3)-1); 6 AzB=zeros(dime(1)-1,dime(2)-1,dime(3)-1); 27 for i=2:dime(1)-1 43 for i=dime(1)-1:dime(1)-1 52 for j=dime(2)-1:dime(2)-1 61 for k=dime(3)-1:dime(3)-1 99 pe=(k-2)*(dime(1)-2)*(dime(2)-2)+(j-2)*(dime(1)-2)+i-1; 114 d=[0 -1 -(dime(1)-2) -(dime(1)-2)*(dime(2)-2)]; [all …]
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/dports/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/tools/matlab/solver/MATLAB_PB_SOLVER_2/ |
H A D | BuildA.m | 3 fc=zeros(dime(1)-1,dime(2)-1,dime(3)-1); 4 AxB=zeros(dime(1)-1,dime(2)-1,dime(3)-1); 5 AyB=zeros(dime(1)-1,dime(2)-1,dime(3)-1); 6 AzB=zeros(dime(1)-1,dime(2)-1,dime(3)-1); 27 for i=2:dime(1)-1 43 for i=dime(1)-1:dime(1)-1 52 for j=dime(2)-1:dime(2)-1 61 for k=dime(3)-1:dime(3)-1 101 pe=(k-2)*(dime(1)-2)*(dime(2)-2)+(j-2)*(dime(1)-2)+i-1; 116 d=[0 -1 -(dime(1)-2) -(dime(1)-2)*(dime(2)-2)]; [all …]
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/dports/science/minc2/minc-release-2.2.00/conversion/ana2mnc/steve_smith_ana2mnc/ |
H A D | analyze2minc.c | 102 swap_short(&pntr->dime.dim[0]) ; 103 swap_short(&pntr->dime.dim[1]) ; 104 swap_short(&pntr->dime.dim[2]) ; 129 swap_long(&pntr->dime.glmax) ; 130 swap_long(&pntr->dime.glmin) ; 283 if(hdr.dime.dim[0] < 0 || hdr.dime.dim[0] > 15) 293 x_dim_short=hdr.dime.dim[1]; 294 y_dim_short=hdr.dime.dim[2]; 295 z_dim_short=hdr.dime.dim[3]; 296 volumes=hdr.dime.dim[4]; [all …]
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/dports/science/tfel/tfel-3.4.0/include/TFEL/Math/Stensor/ |
H A D | DecompositionInPositiveAndNegativeParts.hxx | 45 ST2toST2Traits<DPPType>::dime==StensorTraits<StensorType>::dime && 46 StensorTraits<PPType>::dime==StensorTraits<StensorType>::dime && 79 ST2toST2Traits<DPPType>::dime==StensorTraits<StensorType>::dime && 80 StensorTraits<PPType>::dime==StensorTraits<StensorType>::dime && 113 ST2toST2Traits<DPPType>::dime==StensorTraits<StensorType>::dime && 114 StensorTraits<PPType>::dime==StensorTraits<StensorType>::dime && 156 ST2toST2Traits<DPPType>::dime==StensorTraits<StensorType>::dime && 157 ST2toST2Traits<DNPType>::dime==StensorTraits<StensorType>::dime && 158 StensorTraits<PPType>::dime==StensorTraits<StensorType>::dime && 159 StensorTraits<NPType>::dime==StensorTraits<StensorType>::dime && [all …]
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/dports/science/tfel-edf/tfel-3.2.1/include/TFEL/Math/Stensor/ |
H A D | DecompositionInPositiveAndNegativeParts.hxx | 45 ST2toST2Traits<DPPType>::dime==StensorTraits<StensorType>::dime && 46 StensorTraits<PPType>::dime==StensorTraits<StensorType>::dime && 79 ST2toST2Traits<DPPType>::dime==StensorTraits<StensorType>::dime && 80 StensorTraits<PPType>::dime==StensorTraits<StensorType>::dime && 113 ST2toST2Traits<DPPType>::dime==StensorTraits<StensorType>::dime && 114 StensorTraits<PPType>::dime==StensorTraits<StensorType>::dime && 156 ST2toST2Traits<DPPType>::dime==StensorTraits<StensorType>::dime && 157 ST2toST2Traits<DNPType>::dime==StensorTraits<StensorType>::dime && 158 StensorTraits<PPType>::dime==StensorTraits<StensorType>::dime && 159 StensorTraits<NPType>::dime==StensorTraits<StensorType>::dime && [all …]
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/dports/math/cgal/CGAL-5.3/include/CGAL/ImageIO/ |
H A D | analyze_impl.h | 599 hdr.dime.vox_offset = 0.0; in writeAnalyzeHeader() 600 hdr.dime.funused1 = 0.0; in writeAnalyzeHeader() 601 hdr.dime.funused2 = 0.0; in writeAnalyzeHeader() 602 hdr.dime.funused3 = 0.0; in writeAnalyzeHeader() 603 hdr.dime.cal_max = 0.0; in writeAnalyzeHeader() 604 hdr.dime.cal_min = 0.0; in writeAnalyzeHeader() 606 hdr.dime.dim[0] = 4; in writeAnalyzeHeader() 610 hdr.dime.dim[4] = 1 ; in writeAnalyzeHeader() 746 hdr.dime.vox_offset = 0.0; in writeAnalyzeHeader() 766 hdr.dime.cal_max = 0.0; in writeAnalyzeHeader() [all …]
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