Searched refs:dinucleotide_base_counts (Results 1 – 2 of 2) sorted by relevance
207 final int [][] dinucleotide_base_counts = new int [4][4]; in getRelativeAbundance() local220 ++dinucleotide_base_counts[this_f_base_index][next_f_base_index]; in getRelativeAbundance()229 ++dinucleotide_base_counts[this_r_base_index][next_r_base_index]; in getRelativeAbundance()255 1f * dinucleotide_base_counts[first_base_index][second_base_index] / in getRelativeAbundance()
140 int dinucleotide_base_counts[16] = { in calculateRelativeAbundance() local172 ++dinucleotide_base_counts[IDX(this_f_base_index, next_f_base_index)]; in calculateRelativeAbundance()183 ++dinucleotide_base_counts[IDX(this_r_base_index, next_r_base_index)]; in calculateRelativeAbundance()198 … float dinucleotide_frequency = float(dinucleotide_base_counts[idx]) / (2 * (length - 1)); in calculateRelativeAbundance()