Searched refs:do_breakpoint_detection (Results 1 – 7 of 7) sorted by relevance
18 …cord_size + (sizeof(mapping_result_t) + global_context -> config.do_breakpoint_detection*sizeof(su…100 if(global_context -> config.do_breakpoint_detection) in init_bigtable_results()105 if(global_context -> config.do_breakpoint_detection) in init_bigtable_results()114 if(global_context -> config.do_breakpoint_detection) in init_bigtable_results()140 …cord_size + (sizeof(mapping_result_t) + global_context -> config.do_breakpoint_detection*sizeof(su…196 …if(global_context -> config.do_breakpoint_detection) free(global_context -> bigtable_cache_malloc_… in finalise_bigtable_results()
569 global_context->config.do_breakpoint_detection = 1; in parse_opts_aligner()576 global_context->config.do_breakpoint_detection = 1; in parse_opts_aligner()
658 global_context->config.do_breakpoint_detection = 1; in parse_opts_core()1518 …if(global_context -> config.do_breakpoint_detection && !(current_result -> realign_flags & CORE_NO…3126 …int need_junction_step = global_context -> config.do_breakpoint_detection || global_context -> co…3175 …if(global_context->config.do_breakpoint_detection && current_rlen > EXON_LONG_READ_LENGTH)//&& glo…3452 …context->config.do_breakpoint_detection || global_context-> config.do_fusion_detection || global_c…3656 … global_context->config.exon_annotation_file[0] && global_context->config.do_breakpoint_detection){3752 if(context->config.do_breakpoint_detection)4260 …if((context->config.do_breakpoint_detection || context-> config.do_fusion_detection || context->co…4270 …if((context->config.do_breakpoint_detection || context-> config.do_fusion_detection || context->co…4784 if(global_context -> config.do_breakpoint_detection){
213 int do_breakpoint_detection; member
271 global_context->config.do_breakpoint_detection = 1; in parse_opts_subjunc()
1071 if(global_context -> config.do_breakpoint_detection) in copy_vote_to_alignment_res()2397 …if(global_context -> config.do_breakpoint_detection) current_junction_tmp = is_second_read?junctio… in process_voting_junction_PE_topK()2454 …if(global_context -> config.do_breakpoint_detection) current_junction_tmp = is_second_read?junctio… in process_voting_junction_PE_topK()2505 …if(global_context -> config.do_breakpoint_detection) current_junction_tmp = is_second_read?junctio… in process_voting_junction_PE_topK()2513 if(global_context -> config.do_breakpoint_detection) { in process_voting_junction_PE_topK()3666 …int need_donor_test = global_context->config.do_breakpoint_detection && global_context -> config.c… in donor_score()
4413 context->config.do_breakpoint_detection = 0; in init_global_context()