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Searched refs:domtblfp (Results 1 – 8 of 8) sorted by relevance

/dports/biology/infernal/infernal-1.1.3/hmmer/src/
H A Dhmmscan.c322 FILE *domtblfp = NULL; /* output stream for tabular per-seq (--domtblout) */ in serial_master() local
386 …if (esl_opt_IsOn(go, "--domtblout")) { if ((domtblfp = fopen(esl_opt_GetString(go, "--domtblout"),… in serial_master()
493 …if (domtblfp) p7_tophits_TabularDomains(domtblfp, qsq->name, qsq->acc, info->th, info->pli, (nque… in serial_master()
514 …if (domtblfp) p7_tophits_TabularTail(domtblfp, "hmmscan", p7_SCAN_MODELS, cfg->seqfile, cfg->hmmfi… in serial_master()
543 if (domtblfp) fclose(domtblfp); in serial_master()
721 FILE *domtblfp = NULL; /* output stream for tabular per-seq (--domtblout) */ in mpi_master() local
786 …if (esl_opt_IsOn(go, "--domtblout") && (domtblfp = fopen(esl_opt_GetString(go, "--domtblout"), "w"… in mpi_master()
924 … if (domtblfp) p7_tophits_TabularDomains(domtblfp, qsq->name, qsq->acc, th, pli, (nquery == 1)); in mpi_master()
966 …if (domtblfp) p7_tophits_TabularTail(domtblfp, "hmmscan", p7_SCAN_MODELS, cfg->seqfile, cfg->hmmfi… in mpi_master()
983 if (domtblfp) fclose(domtblfp); in mpi_master()
H A Dhmmsearch.c355 …FILE *domtblfp = NULL; /* output stream for tabular per-dom (--domtblout) … in serial_master() local
418 …if (esl_opt_IsOn(go, "--domtblout")) { if ((domtblfp = fopen(esl_opt_GetString(go, "--domtblout"),… in serial_master()
548 …if (domtblfp) p7_tophits_TabularDomains(domtblfp, hmm->name, hmm->acc, info->th, info->pli, (nque… in serial_master()
598 …if (domtblfp) p7_tophits_TabularTail(domtblfp, "hmmsearch", p7_SEARCH_SEQS, cfg->hmmfile, cfg->dbf… in serial_master()
627 if (domtblfp) fclose(domtblfp); in serial_master()
809 …FILE *domtblfp = NULL; /* output stream for tabular per-dom (--domtblout) … in mpi_master() local
879 …if (esl_opt_IsOn(go, "--domtblout") && (domtblfp = fopen(esl_opt_GetString(go, "--domtblout"), "w"… in mpi_master()
1036 … if (domtblfp) p7_tophits_TabularDomains(domtblfp, hmm->name, hmm->acc, th, pli, (nquery == 1)); in mpi_master()
1104 …if (domtblfp) p7_tophits_TabularTail(domtblfp, "hmmsearch", p7_SEARCH_SEQS, cfg->hmmfile, cfg->db… in mpi_master()
1123 if (domtblfp) fclose(domtblfp); in mpi_master()
H A Dphmmer.c385 FILE *domtblfp = NULL; /* output stream for tabular per-seq (--domtblout) */ in serial_master() local
454 …if (esl_opt_IsOn(go, "--domtblout")) { if ((domtblfp = fopen(esl_opt_GetString(go, "--domtblout"),… in serial_master()
611 …if (domtblfp) p7_tophits_TabularDomains(domtblfp, qsq->name, qsq->acc, info->th, info->pli, (nque… in serial_master()
655 …if (domtblfp) p7_tophits_TabularTail(domtblfp, "phmmer", p7_SEARCH_SEQS, cfg->qfile, cfg->dbfile,… in serial_master()
687 if (domtblfp != NULL) fclose(domtblfp); in serial_master()
871 FILE *domtblfp = NULL; /* output stream for tabular per-seq (--domtblout) */ in mpi_master() local
949 …if (esl_opt_IsOn(go, "--domtblout") && (domtblfp = fopen(esl_opt_GetString(go, "--domtblout"), "w"… in mpi_master()
1124 … if (domtblfp) p7_tophits_TabularDomains(domtblfp, qsq->name, qsq->acc, th, pli, (nquery == 1)); in mpi_master()
1188 …if (domtblfp) p7_tophits_TabularTail(domtblfp, "phmmer", p7_SEARCH_SEQS, cfg->qfile, cfg->dbfile, … in mpi_master()
1210 if (domtblfp != NULL) fclose(domtblfp); in mpi_master()
H A Djackhmmer.c433 FILE *domtblfp = NULL; /* output stream for tabular per-seq (--domtblout) */ in serial_master() local
505 …if (esl_opt_IsOn(go, "--domtblout") && (domtblfp = fopen(esl_opt_GetString(go, "--domtblout"), "w"… in serial_master()
720 …if (domtblfp) p7_tophits_TabularDomains(domtblfp, qsq->name, qsq->acc, info->th, info->pli, (nquer… in serial_master()
753 …if (domtblfp) p7_tophits_TabularTail(domtblfp, "jackhmmer", p7_SEARCH_SEQS, cfg->qfile, cfg->dbfil… in serial_master()
786 if (domtblfp != NULL) fclose(domtblfp); in serial_master()
987 FILE *domtblfp = NULL; /* output stream for tabular per-seq (--domtblout) */ in mpi_master() local
1056 …if (esl_opt_IsOn(go, "--domtblout") && (domtblfp = fopen(esl_opt_GetString(go, "--domtblout"), "w"… in mpi_master()
1287 … if (domtblfp) p7_tophits_TabularDomains(domtblfp, qsq->name, qsq->acc, th, pli, (nquery == 1)); in mpi_master()
1338 …if (domtblfp) p7_tophits_TabularTail(domtblfp, "jackhmmer", p7_SEARCH_SEQS, cfg->qfile, cfg->dbfil… in mpi_master()
1358 if (domtblfp != NULL) fclose(domtblfp); in mpi_master()
/dports/biology/hmmer/hmmer-3.3/src/
H A Dhmmscan.c322 FILE *domtblfp = NULL; /* output stream for tabular per-seq (--domtblout) */ in serial_master() local
386 …if (esl_opt_IsOn(go, "--domtblout")) { if ((domtblfp = fopen(esl_opt_GetString(go, "--domtblout"),… in serial_master()
493 …if (domtblfp) p7_tophits_TabularDomains(domtblfp, qsq->name, qsq->acc, info->th, info->pli, (nque… in serial_master()
514 …if (domtblfp) p7_tophits_TabularTail(domtblfp, "hmmscan", p7_SCAN_MODELS, cfg->seqfile, cfg->hmmfi… in serial_master()
543 if (domtblfp) fclose(domtblfp); in serial_master()
721 FILE *domtblfp = NULL; /* output stream for tabular per-seq (--domtblout) */ in mpi_master() local
786 …if (esl_opt_IsOn(go, "--domtblout") && (domtblfp = fopen(esl_opt_GetString(go, "--domtblout"), "w"… in mpi_master()
924 … if (domtblfp) p7_tophits_TabularDomains(domtblfp, qsq->name, qsq->acc, th, pli, (nquery == 1)); in mpi_master()
966 …if (domtblfp) p7_tophits_TabularTail(domtblfp, "hmmscan", p7_SCAN_MODELS, cfg->seqfile, cfg->hmmfi… in mpi_master()
983 if (domtblfp) fclose(domtblfp); in mpi_master()
H A Dhmmsearch.c355 …FILE *domtblfp = NULL; /* output stream for tabular per-dom (--domtblout) … in serial_master() local
418 …if (esl_opt_IsOn(go, "--domtblout")) { if ((domtblfp = fopen(esl_opt_GetString(go, "--domtblout"),… in serial_master()
548 …if (domtblfp) p7_tophits_TabularDomains(domtblfp, hmm->name, hmm->acc, info->th, info->pli, (nque… in serial_master()
598 …if (domtblfp) p7_tophits_TabularTail(domtblfp, "hmmsearch", p7_SEARCH_SEQS, cfg->hmmfile, cfg->dbf… in serial_master()
627 if (domtblfp) fclose(domtblfp); in serial_master()
809 …FILE *domtblfp = NULL; /* output stream for tabular per-dom (--domtblout) … in mpi_master() local
879 …if (esl_opt_IsOn(go, "--domtblout") && (domtblfp = fopen(esl_opt_GetString(go, "--domtblout"), "w"… in mpi_master()
1036 … if (domtblfp) p7_tophits_TabularDomains(domtblfp, hmm->name, hmm->acc, th, pli, (nquery == 1)); in mpi_master()
1104 …if (domtblfp) p7_tophits_TabularTail(domtblfp, "hmmsearch", p7_SEARCH_SEQS, cfg->hmmfile, cfg->db… in mpi_master()
1123 if (domtblfp) fclose(domtblfp); in mpi_master()
H A Dphmmer.c385 FILE *domtblfp = NULL; /* output stream for tabular per-seq (--domtblout) */ in serial_master() local
454 …if (esl_opt_IsOn(go, "--domtblout")) { if ((domtblfp = fopen(esl_opt_GetString(go, "--domtblout"),… in serial_master()
611 …if (domtblfp) p7_tophits_TabularDomains(domtblfp, qsq->name, qsq->acc, info->th, info->pli, (nque… in serial_master()
655 …if (domtblfp) p7_tophits_TabularTail(domtblfp, "phmmer", p7_SEARCH_SEQS, cfg->qfile, cfg->dbfile,… in serial_master()
687 if (domtblfp != NULL) fclose(domtblfp); in serial_master()
871 FILE *domtblfp = NULL; /* output stream for tabular per-seq (--domtblout) */ in mpi_master() local
949 …if (esl_opt_IsOn(go, "--domtblout") && (domtblfp = fopen(esl_opt_GetString(go, "--domtblout"), "w"… in mpi_master()
1124 … if (domtblfp) p7_tophits_TabularDomains(domtblfp, qsq->name, qsq->acc, th, pli, (nquery == 1)); in mpi_master()
1188 …if (domtblfp) p7_tophits_TabularTail(domtblfp, "phmmer", p7_SEARCH_SEQS, cfg->qfile, cfg->dbfile, … in mpi_master()
1210 if (domtblfp != NULL) fclose(domtblfp); in mpi_master()
H A Djackhmmer.c433 FILE *domtblfp = NULL; /* output stream for tabular per-seq (--domtblout) */ in serial_master() local
505 …if (esl_opt_IsOn(go, "--domtblout") && (domtblfp = fopen(esl_opt_GetString(go, "--domtblout"), "w"… in serial_master()
720 …if (domtblfp) p7_tophits_TabularDomains(domtblfp, qsq->name, qsq->acc, info->th, info->pli, (nquer… in serial_master()
753 …if (domtblfp) p7_tophits_TabularTail(domtblfp, "jackhmmer", p7_SEARCH_SEQS, cfg->qfile, cfg->dbfil… in serial_master()
786 if (domtblfp != NULL) fclose(domtblfp); in serial_master()
987 FILE *domtblfp = NULL; /* output stream for tabular per-seq (--domtblout) */ in mpi_master() local
1056 …if (esl_opt_IsOn(go, "--domtblout") && (domtblfp = fopen(esl_opt_GetString(go, "--domtblout"), "w"… in mpi_master()
1287 … if (domtblfp) p7_tophits_TabularDomains(domtblfp, qsq->name, qsq->acc, th, pli, (nquery == 1)); in mpi_master()
1338 …if (domtblfp) p7_tophits_TabularTail(domtblfp, "jackhmmer", p7_SEARCH_SEQS, cfg->qfile, cfg->dbfil… in mpi_master()
1358 if (domtblfp != NULL) fclose(domtblfp); in mpi_master()