/dports/biology/infernal/infernal-1.1.3/hmmer/src/ |
H A D | hmmscan.c | 322 FILE *domtblfp = NULL; /* output stream for tabular per-seq (--domtblout) */ in serial_master() local 386 …if (esl_opt_IsOn(go, "--domtblout")) { if ((domtblfp = fopen(esl_opt_GetString(go, "--domtblout"),… in serial_master() 493 …if (domtblfp) p7_tophits_TabularDomains(domtblfp, qsq->name, qsq->acc, info->th, info->pli, (nque… in serial_master() 514 …if (domtblfp) p7_tophits_TabularTail(domtblfp, "hmmscan", p7_SCAN_MODELS, cfg->seqfile, cfg->hmmfi… in serial_master() 543 if (domtblfp) fclose(domtblfp); in serial_master() 721 FILE *domtblfp = NULL; /* output stream for tabular per-seq (--domtblout) */ in mpi_master() local 786 …if (esl_opt_IsOn(go, "--domtblout") && (domtblfp = fopen(esl_opt_GetString(go, "--domtblout"), "w"… in mpi_master() 924 … if (domtblfp) p7_tophits_TabularDomains(domtblfp, qsq->name, qsq->acc, th, pli, (nquery == 1)); in mpi_master() 966 …if (domtblfp) p7_tophits_TabularTail(domtblfp, "hmmscan", p7_SCAN_MODELS, cfg->seqfile, cfg->hmmfi… in mpi_master() 983 if (domtblfp) fclose(domtblfp); in mpi_master()
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H A D | hmmsearch.c | 355 …FILE *domtblfp = NULL; /* output stream for tabular per-dom (--domtblout) … in serial_master() local 418 …if (esl_opt_IsOn(go, "--domtblout")) { if ((domtblfp = fopen(esl_opt_GetString(go, "--domtblout"),… in serial_master() 548 …if (domtblfp) p7_tophits_TabularDomains(domtblfp, hmm->name, hmm->acc, info->th, info->pli, (nque… in serial_master() 598 …if (domtblfp) p7_tophits_TabularTail(domtblfp, "hmmsearch", p7_SEARCH_SEQS, cfg->hmmfile, cfg->dbf… in serial_master() 627 if (domtblfp) fclose(domtblfp); in serial_master() 809 …FILE *domtblfp = NULL; /* output stream for tabular per-dom (--domtblout) … in mpi_master() local 879 …if (esl_opt_IsOn(go, "--domtblout") && (domtblfp = fopen(esl_opt_GetString(go, "--domtblout"), "w"… in mpi_master() 1036 … if (domtblfp) p7_tophits_TabularDomains(domtblfp, hmm->name, hmm->acc, th, pli, (nquery == 1)); in mpi_master() 1104 …if (domtblfp) p7_tophits_TabularTail(domtblfp, "hmmsearch", p7_SEARCH_SEQS, cfg->hmmfile, cfg->db… in mpi_master() 1123 if (domtblfp) fclose(domtblfp); in mpi_master()
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H A D | phmmer.c | 385 FILE *domtblfp = NULL; /* output stream for tabular per-seq (--domtblout) */ in serial_master() local 454 …if (esl_opt_IsOn(go, "--domtblout")) { if ((domtblfp = fopen(esl_opt_GetString(go, "--domtblout"),… in serial_master() 611 …if (domtblfp) p7_tophits_TabularDomains(domtblfp, qsq->name, qsq->acc, info->th, info->pli, (nque… in serial_master() 655 …if (domtblfp) p7_tophits_TabularTail(domtblfp, "phmmer", p7_SEARCH_SEQS, cfg->qfile, cfg->dbfile,… in serial_master() 687 if (domtblfp != NULL) fclose(domtblfp); in serial_master() 871 FILE *domtblfp = NULL; /* output stream for tabular per-seq (--domtblout) */ in mpi_master() local 949 …if (esl_opt_IsOn(go, "--domtblout") && (domtblfp = fopen(esl_opt_GetString(go, "--domtblout"), "w"… in mpi_master() 1124 … if (domtblfp) p7_tophits_TabularDomains(domtblfp, qsq->name, qsq->acc, th, pli, (nquery == 1)); in mpi_master() 1188 …if (domtblfp) p7_tophits_TabularTail(domtblfp, "phmmer", p7_SEARCH_SEQS, cfg->qfile, cfg->dbfile, … in mpi_master() 1210 if (domtblfp != NULL) fclose(domtblfp); in mpi_master()
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H A D | jackhmmer.c | 433 FILE *domtblfp = NULL; /* output stream for tabular per-seq (--domtblout) */ in serial_master() local 505 …if (esl_opt_IsOn(go, "--domtblout") && (domtblfp = fopen(esl_opt_GetString(go, "--domtblout"), "w"… in serial_master() 720 …if (domtblfp) p7_tophits_TabularDomains(domtblfp, qsq->name, qsq->acc, info->th, info->pli, (nquer… in serial_master() 753 …if (domtblfp) p7_tophits_TabularTail(domtblfp, "jackhmmer", p7_SEARCH_SEQS, cfg->qfile, cfg->dbfil… in serial_master() 786 if (domtblfp != NULL) fclose(domtblfp); in serial_master() 987 FILE *domtblfp = NULL; /* output stream for tabular per-seq (--domtblout) */ in mpi_master() local 1056 …if (esl_opt_IsOn(go, "--domtblout") && (domtblfp = fopen(esl_opt_GetString(go, "--domtblout"), "w"… in mpi_master() 1287 … if (domtblfp) p7_tophits_TabularDomains(domtblfp, qsq->name, qsq->acc, th, pli, (nquery == 1)); in mpi_master() 1338 …if (domtblfp) p7_tophits_TabularTail(domtblfp, "jackhmmer", p7_SEARCH_SEQS, cfg->qfile, cfg->dbfil… in mpi_master() 1358 if (domtblfp != NULL) fclose(domtblfp); in mpi_master()
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/dports/biology/hmmer/hmmer-3.3/src/ |
H A D | hmmscan.c | 322 FILE *domtblfp = NULL; /* output stream for tabular per-seq (--domtblout) */ in serial_master() local 386 …if (esl_opt_IsOn(go, "--domtblout")) { if ((domtblfp = fopen(esl_opt_GetString(go, "--domtblout"),… in serial_master() 493 …if (domtblfp) p7_tophits_TabularDomains(domtblfp, qsq->name, qsq->acc, info->th, info->pli, (nque… in serial_master() 514 …if (domtblfp) p7_tophits_TabularTail(domtblfp, "hmmscan", p7_SCAN_MODELS, cfg->seqfile, cfg->hmmfi… in serial_master() 543 if (domtblfp) fclose(domtblfp); in serial_master() 721 FILE *domtblfp = NULL; /* output stream for tabular per-seq (--domtblout) */ in mpi_master() local 786 …if (esl_opt_IsOn(go, "--domtblout") && (domtblfp = fopen(esl_opt_GetString(go, "--domtblout"), "w"… in mpi_master() 924 … if (domtblfp) p7_tophits_TabularDomains(domtblfp, qsq->name, qsq->acc, th, pli, (nquery == 1)); in mpi_master() 966 …if (domtblfp) p7_tophits_TabularTail(domtblfp, "hmmscan", p7_SCAN_MODELS, cfg->seqfile, cfg->hmmfi… in mpi_master() 983 if (domtblfp) fclose(domtblfp); in mpi_master()
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H A D | hmmsearch.c | 355 …FILE *domtblfp = NULL; /* output stream for tabular per-dom (--domtblout) … in serial_master() local 418 …if (esl_opt_IsOn(go, "--domtblout")) { if ((domtblfp = fopen(esl_opt_GetString(go, "--domtblout"),… in serial_master() 548 …if (domtblfp) p7_tophits_TabularDomains(domtblfp, hmm->name, hmm->acc, info->th, info->pli, (nque… in serial_master() 598 …if (domtblfp) p7_tophits_TabularTail(domtblfp, "hmmsearch", p7_SEARCH_SEQS, cfg->hmmfile, cfg->dbf… in serial_master() 627 if (domtblfp) fclose(domtblfp); in serial_master() 809 …FILE *domtblfp = NULL; /* output stream for tabular per-dom (--domtblout) … in mpi_master() local 879 …if (esl_opt_IsOn(go, "--domtblout") && (domtblfp = fopen(esl_opt_GetString(go, "--domtblout"), "w"… in mpi_master() 1036 … if (domtblfp) p7_tophits_TabularDomains(domtblfp, hmm->name, hmm->acc, th, pli, (nquery == 1)); in mpi_master() 1104 …if (domtblfp) p7_tophits_TabularTail(domtblfp, "hmmsearch", p7_SEARCH_SEQS, cfg->hmmfile, cfg->db… in mpi_master() 1123 if (domtblfp) fclose(domtblfp); in mpi_master()
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H A D | phmmer.c | 385 FILE *domtblfp = NULL; /* output stream for tabular per-seq (--domtblout) */ in serial_master() local 454 …if (esl_opt_IsOn(go, "--domtblout")) { if ((domtblfp = fopen(esl_opt_GetString(go, "--domtblout"),… in serial_master() 611 …if (domtblfp) p7_tophits_TabularDomains(domtblfp, qsq->name, qsq->acc, info->th, info->pli, (nque… in serial_master() 655 …if (domtblfp) p7_tophits_TabularTail(domtblfp, "phmmer", p7_SEARCH_SEQS, cfg->qfile, cfg->dbfile,… in serial_master() 687 if (domtblfp != NULL) fclose(domtblfp); in serial_master() 871 FILE *domtblfp = NULL; /* output stream for tabular per-seq (--domtblout) */ in mpi_master() local 949 …if (esl_opt_IsOn(go, "--domtblout") && (domtblfp = fopen(esl_opt_GetString(go, "--domtblout"), "w"… in mpi_master() 1124 … if (domtblfp) p7_tophits_TabularDomains(domtblfp, qsq->name, qsq->acc, th, pli, (nquery == 1)); in mpi_master() 1188 …if (domtblfp) p7_tophits_TabularTail(domtblfp, "phmmer", p7_SEARCH_SEQS, cfg->qfile, cfg->dbfile, … in mpi_master() 1210 if (domtblfp != NULL) fclose(domtblfp); in mpi_master()
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H A D | jackhmmer.c | 433 FILE *domtblfp = NULL; /* output stream for tabular per-seq (--domtblout) */ in serial_master() local 505 …if (esl_opt_IsOn(go, "--domtblout") && (domtblfp = fopen(esl_opt_GetString(go, "--domtblout"), "w"… in serial_master() 720 …if (domtblfp) p7_tophits_TabularDomains(domtblfp, qsq->name, qsq->acc, info->th, info->pli, (nquer… in serial_master() 753 …if (domtblfp) p7_tophits_TabularTail(domtblfp, "jackhmmer", p7_SEARCH_SEQS, cfg->qfile, cfg->dbfil… in serial_master() 786 if (domtblfp != NULL) fclose(domtblfp); in serial_master() 987 FILE *domtblfp = NULL; /* output stream for tabular per-seq (--domtblout) */ in mpi_master() local 1056 …if (esl_opt_IsOn(go, "--domtblout") && (domtblfp = fopen(esl_opt_GetString(go, "--domtblout"), "w"… in mpi_master() 1287 … if (domtblfp) p7_tophits_TabularDomains(domtblfp, qsq->name, qsq->acc, th, pli, (nquery == 1)); in mpi_master() 1338 …if (domtblfp) p7_tophits_TabularTail(domtblfp, "jackhmmer", p7_SEARCH_SEQS, cfg->qfile, cfg->dbfil… in mpi_master() 1358 if (domtblfp != NULL) fclose(domtblfp); in mpi_master()
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