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Searched refs:dst_coding (Results 1 – 12 of 12) sorted by relevance

/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/util/sequtil/
H A Dsequtil_convert.cpp52 TCoding dst_coding) in Convert() argument
56 dst, dst_coding); in Convert()
67 TCoding dst_coding) in Convert() argument
71 dst, dst_coding); in Convert()
82 TCoding dst_coding) in Convert() argument
86 dst, dst_coding); in Convert()
97 TCoding dst_coding) in Convert() argument
111 TCoding dst_coding) in Convert() argument
182 TCoding& dst_coding, in Pack() argument
193 TCoding& dst_coding, in Pack() argument
[all …]
H A Dsequtil_convert_imp.hpp57 TCoding dst_coding) in Convert() argument
66 ResizeDst(dst, dst_coding, length); in Convert()
69 &*dst.begin(), dst_coding); in Convert()
75 char* dst, TCoding dst_coding);
110 TCoding& dst_coding, in Pack() argument
123 &*dst.begin(), dst_coding); in Pack()
124 if ( dst_coding == CSeqUtil::e_Ncbi2na ) { in Pack()
135 char* dst, TCoding& dst_coding);
H A Dsequtil_convert_imp.cpp66 TCoding dst_coding) in Convert() argument
77 if ( src_coding == dst_coding ) { in Convert()
88 switch ( dst_coding ) { in Convert()
105 switch ( dst_coding ) { in Convert()
122 switch ( dst_coding ) { in Convert()
139 switch ( dst_coding ) { in Convert()
157 switch ( dst_coding ) { in Convert()
180 switch ( dst_coding ) { in Convert()
193 switch ( dst_coding ) { in Convert()
207 switch ( dst_coding ) { in Convert()
[all …]
/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/util/sequtil/
H A Dsequtil_convert.cpp52 TCoding dst_coding) in Convert() argument
56 dst, dst_coding); in Convert()
67 TCoding dst_coding) in Convert() argument
71 dst, dst_coding); in Convert()
82 TCoding dst_coding) in Convert() argument
86 dst, dst_coding); in Convert()
97 TCoding dst_coding) in Convert() argument
111 TCoding dst_coding) in Convert() argument
182 TCoding& dst_coding, in Pack() argument
193 TCoding& dst_coding, in Pack() argument
[all …]
H A Dsequtil_convert_imp.hpp57 TCoding dst_coding) in Convert() argument
66 ResizeDst(dst, dst_coding, length); in Convert()
69 &*dst.begin(), dst_coding); in Convert()
75 char* dst, TCoding dst_coding);
110 TCoding& dst_coding, in Pack() argument
123 &*dst.begin(), dst_coding); in Pack()
124 if ( dst_coding == CSeqUtil::e_Ncbi2na ) { in Pack()
135 char* dst, TCoding& dst_coding);
H A Dsequtil_convert_imp.cpp66 TCoding dst_coding) in Convert() argument
77 if ( src_coding == dst_coding ) { in Convert()
88 switch ( dst_coding ) { in Convert()
105 switch ( dst_coding ) { in Convert()
122 switch ( dst_coding ) { in Convert()
139 switch ( dst_coding ) { in Convert()
157 switch ( dst_coding ) { in Convert()
180 switch ( dst_coding ) { in Convert()
193 switch ( dst_coding ) { in Convert()
207 switch ( dst_coding ) { in Convert()
[all …]
/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/include/util/sequtil/
H A Dsequtil_convert.hpp74 string& dst, TCoding dst_coding);
79 vector< char >& dst, TCoding dst_coding);
84 string& dst, TCoding dst_coding);
89 vector< char >& dst, TCoding dst_coding);
94 char dst[], TCoding dst_coding);
125 vector<char>& dst, TCoding& dst_coding,
128 vector<char>& dst, TCoding& dst_coding,
131 char* dst, TCoding& dst_coding);
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/util/sequtil/
H A Dsequtil_convert.hpp74 string& dst, TCoding dst_coding);
79 vector< char >& dst, TCoding dst_coding);
84 string& dst, TCoding dst_coding);
89 vector< char >& dst, TCoding dst_coding);
94 char dst[], TCoding dst_coding);
125 vector<char>& dst, TCoding& dst_coding,
128 vector<char>& dst, TCoding& dst_coding,
131 char* dst, TCoding& dst_coding);
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objmgr/
H A Dseq_vector.cpp328 TCoding dst_coding = GetCoding(); in GetPackedSeqData() local
329 switch ( dst_coding ) { in GetPackedSeqData()
834 TCoding dst_coding = GetCoding(); in x_GetPacked8SeqData() local
848 if ( dst_coding != src_coding || reverse || in x_GetPacked8SeqData()
852 if ( !table && src_coding != dst_coding ) { in x_GetPacked8SeqData()
926 TCoding dst_coding = GetCoding(); in x_GetPacked4naSeqData() local
941 if ( dst_coding != src_coding || reverse || in x_GetPacked4naSeqData()
945 if ( !table && src_coding != dst_coding ) { in x_GetPacked4naSeqData()
1017 TCoding dst_coding = CSeq_data::e_Ncbi2na; in x_GetPacked2naSeqData() local
1022 dst_coding = CSeq_data::e_Ncbi4na; in x_GetPacked2naSeqData()
[all …]
/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objmgr/
H A Dseq_vector.cpp328 TCoding dst_coding = GetCoding(); in GetPackedSeqData() local
329 switch ( dst_coding ) { in GetPackedSeqData()
834 TCoding dst_coding = GetCoding(); in x_GetPacked8SeqData() local
848 if ( dst_coding != src_coding || reverse || in x_GetPacked8SeqData()
852 if ( !table && src_coding != dst_coding ) { in x_GetPacked8SeqData()
926 TCoding dst_coding = GetCoding(); in x_GetPacked4naSeqData() local
941 if ( dst_coding != src_coding || reverse || in x_GetPacked4naSeqData()
945 if ( !table && src_coding != dst_coding ) { in x_GetPacked4naSeqData()
1017 TCoding dst_coding = CSeq_data::e_Ncbi2na; in x_GetPacked2naSeqData() local
1022 dst_coding = CSeq_data::e_Ncbi4na; in x_GetPacked2naSeqData()
[all …]
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/edit/
H A Dgaps_edit.cpp62 CSeqUtil::TCoding dst_coding = CSeqUtil::e_Iupacna; in Make_Iupacna() local
69 CSeqConvert::Convert(src, src_coding, 0, len, decoded, dst_coding); \ in Make_Iupacna()
/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objtools/edit/
H A Dgaps_edit.cpp62 CSeqUtil::TCoding dst_coding = CSeqUtil::e_Iupacna; in Make_Iupacna() local
69 CSeqConvert::Convert(src, src_coding, 0, len, decoded, dst_coding); \ in Make_Iupacna()