Searched refs:dtNewDist (Results 1 – 3 of 3) sorted by relevance
| /dports/biology/clustal-omega/clustal-omega-1.2.4/src/clustal/ |
| H A D | muscle_upgma.c | 370 dist_t dtNewDist; in MuscleUpgma2() local
381 dtNewDist = 0.0; in MuscleUpgma2()
385 dtNewDist = AVG(dL, dR); in MuscleUpgma2()
389 dtNewDist = MIN(dL, dR); in MuscleUpgma2()
393 dtNewDist = MAX(dL, dR); in MuscleUpgma2()
398 dtNewDist = g_dSUEFF*AVG(dL, dR) + (1 - g_dSUEFF)*MIN(dL, dR); in MuscleUpgma2()
420 j, Lmin, dL, Rmin, dR, dtNewDist); in MuscleUpgma2()
422 g_Dist[vL] = dtNewDist; in MuscleUpgma2()
423 if (dtNewDist < dtNewMinDist) { in MuscleUpgma2()
424 dtNewMinDist = dtNewDist; in MuscleUpgma2()
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| /dports/biology/muscle/muscle-3.8.1551/ |
| H A D | upgma2.cpp | 252 dist_t dtNewDist; in UPGMA2() local
257 dtNewDist = AVG(dL, dR); in UPGMA2()
261 dtNewDist = MIN(dL, dR); in UPGMA2()
265 dtNewDist = MAX(dL, dR); in UPGMA2()
269 dtNewDist = g_dSUEFF*AVG(dL, dR) + (1 - g_dSUEFF)*MIN(dL, dR); in UPGMA2()
290 j, Lmin, dL, Rmin, dR, dtNewDist); in UPGMA2()
292 g_Dist[vL] = dtNewDist; in UPGMA2()
293 if (dtNewDist < dtNewMinDist) in UPGMA2()
295 dtNewMinDist = dtNewDist; in UPGMA2()
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| /dports/biology/ugene/ugene-40.1/src/plugins_3rdparty/umuscle/src/muscle/ |
| H A D | upgma2.cpp | 290 dist_t dtNewDist; in UPGMA2() local
295 dtNewDist = AVG(dL, dR); in UPGMA2()
299 dtNewDist = MIN(dL, dR); in UPGMA2()
303 dtNewDist = MAX(dL, dR); in UPGMA2()
307 dtNewDist = g_dSUEFF*AVG(dL, dR) + (1 - g_dSUEFF)*MIN(dL, dR); in UPGMA2()
328 j, Lmin, dL, Rmin, dR, dtNewDist); in UPGMA2()
330 g_Dist[vL] = dtNewDist; in UPGMA2()
331 if (dtNewDist < dtNewMinDist) in UPGMA2()
333 dtNewMinDist = dtNewDist; in UPGMA2()
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