Searched refs:eBestPlacement (Results 1 – 5 of 5) sorted by relevance
460 Status() |= CGeneModel::eBestPlacement; in CAlignModel()
791 …((algn.Status()&CGeneModel::eBestPlacement) || (algn.Exons().size() > 1 && gene.front()->Exons().s… in CheckCompatibility()793 …else if(algn.Status() & CGeneModel::eBestPlacement && (algn.Exons().size() == 1 || (algn.Status()&… in CheckCompatibility()4257 …if(align.GetCdsInfo().ProtReadingFrame().NotEmpty() && (align.Status()&eBestPlacement) && ((*it)->… in SetBestPlacement()4263 Status() |= eBestPlacement; in SetBestPlacement()4675 …stedProt().empty() && align.TrustedmRNA().empty()) || !(align.Status()&CGeneModel::eBestPlacement)) in RestoreReasonableConfirmedStart()6055 if((a->Status()&CGeneModel::eBestPlacement) != (b->Status()&CGeneModel::eBestPlacement)) in operator ()()6056 … return (a->Status()&CGeneModel::eBestPlacement) > (b->Status()&CGeneModel::eBestPlacement); in operator ()()6268 …ms && (algn.Type()&CGeneModel::eProt) && !(algn.Status()&CGeneModel::eBestPlacement) && orig->Alig… in ScoreCDSes_FilterOutPoorAlignments()
1736 if ((a.Status()&CGeneModel::eBestPlacement)!=0) attributes["flags"] += ",BestPlacement"; in CollectAttributes()1856 else if (*f == "BestPlacement") a.Status() |= CGeneModel::eBestPlacement; in ParseAttributes()
959 if(Status()&eBestPlacement) in MakeSeqAlign()
383 eBestPlacement = 512, enumerator