Searched refs:eChain (Results 1 – 11 of 11) sorted by relevance
398 if (m && (m->Type()&(CAlignModel::eChain|CAlignModel::eGnomon))!=0) { in ExpandSupport()435 if (m != NULL && (m->Type()&CGeneModel::eChain)) { //output supporting chains (gnomon) in DumpEvidence()472 if(model.Type()&CGeneModel::eChain) { in ModelMethod()489 if(model.Type()&CGeneModel::eChain) { in create_ModelEvidence_user_object()527 if (m->Type()&CGeneModel::eChain) { in create_ModelEvidence_user_object()536 if (type&CGeneModel::eChain) { in create_ModelEvidence_user_object()655 if (model.Type() & (CGeneModel::eGnomon | CGeneModel::eChain)) in create_internal_feature()937 bool is_align = !(Type()&(eChain|eGnomon)); in MakeSeqAlign()1035 model.SetType(CGeneModel::eChain); in RestoreModelMethod()
1676 if ((type & eChain)!=0) return "Chainer"; in TypeToString()1886 …if(((a.Type() & CGeneModel::eGnomon) != 0 || (a.Type() & CGeneModel::eChain) != 0) && target.subst… in ParseAttributes()1896 …if((a.Type() & CGeneModel::eGnomon) != 0 || (a.Type() & CGeneModel::eChain) != 0) { // handles leg… in ParseAttributes()2260 else if (rec.source == "Chainer") a.SetType(a.Type() | CGeneModel::eChain); in readGFF3()
762 if (m.Type() & (CGeneModel::eChain | CGeneModel::eGnomon)) { in transform_model()
4187 SetType(eChain); in CChain()
484 for(edge eChain : chains) { in merge() local485 node tgt = nodeUPR2UPR_res[eChain->target()]; in merge()486 node src = nodeUPR2UPR_res[eChain->source()]; in merge()488 edgeUPR2UPR_res[eChain] = eNew; in merge()
137 for(edge eChain : chain) { in layout() local138 node tgtUPR = eChain->target(); in layout()
107 eChain = 48, enumerator
368 eChain = 128, enumerator
252 {eChain, "Chain"},