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Searched refs:eEST (Results 1 – 7 of 7) sorted by relevance

/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/format/
H A Dkeywords_item.cpp90 eEST, enumerator
123 if (tech == eEST) { in s_CheckSpecialKeyword()
198 tech = eEST; in x_GatherInfo()
/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objtools/format/
H A Dkeywords_item.cpp90 eEST, enumerator
123 if (tech == eEST) { in s_CheckSpecialKeyword()
198 tech = eEST; in x_GatherInfo()
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/gnomon/
H A Daligncollapser.cpp57 CGeneModel a(isPlus() ? ePlus : eMinus, 0, isEST() ? CGeneModel::eEST : CGeneModel::eSR); in GetAlignment()
137 if(align.Type()&CGeneModel::eEST) in CAlignCommon()
603 …if((align.Type()&CGeneModel::eEST) && (int)editedmodel.Exons().size() == 1 && editedmodel.Limits()… in RemoveNotSupportedIntronsFromTranscript()
1347 if((align.Type()&CGeneModel::eEST) && !m_filterest) in FilterAlignments()
1645 if((align.Type()&CGeneModel::eEST) && !m_filterest) in FilterAlignments()
1706 if((align.Type()&CGeneModel::eEST) && (int)align.Exons().size() == 1) { in FilterAlignments()
1778 if((align.Type()&CGeneModel::eEST) && (int)align.Exons().size() == 1) { in FilterAlignments()
2041 if(i->Type() == CGeneModel::eEST) { in GetCollapsedAlgnments()
2357 ((align.Type()&CGeneModel::eEST) && !m_filterest) || in AddAlignment()
2374 if(align.Type()&(CGeneModel::eEST|CGeneModel::emRNA)) in AddAlignment()
[all …]
H A Dgnomon_model.cpp1278 …SetType(Type() | ((CGeneModel::eProt|CGeneModel::eSR|CGeneModel::eEST|CGeneModel::emRNA|CGeneModel… in Extend()
1678 if ((type & (eSR|eEST|emRNA|eNotForChaining))!=0) return "Splign"; in TypeToString()
1729 if ((a.Type() &CGeneModel::eEST)!=0) attributes["flags"] += ",EST"; in CollectAttributes()
1848 else if (*f == "EST") a.SetType(a.Type()| CGeneModel::eEST); in ParseAttributes()
H A Dasn1.cpp553 } else if (type&CGeneModel::eEST) { in create_ModelEvidence_user_object()
H A Dchainer.cpp3066 else if(align.Type() == CGeneModel::eEST) in MakeChains()
4568 SetType(Type() & (~(eSR | eEST | emRNA | eProt | eNotForChaining))); in CalculateSupportAndWeightFromMembers()
4573 SetType(Type() | (align.Type() & (eSR | eEST | emRNA | eProt | eNotForChaining))); in CalculateSupportAndWeightFromMembers()
5515 …if(align.Type() == CGeneModel::emRNA || align.Type() == CGeneModel::eEST || align.Type() == CGeneM… in ClipLowCoverageUTR()
5651 …if(align.Type() == CGeneModel::emRNA || align.Type() == CGeneModel::eEST) { //OK to clip protein… in CalculateDropLimits()
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/algo/gnomon/
H A Dgnomon_model.hpp364 eEST = 8, enumerator