Searched refs:eEST (Results 1 – 7 of 7) sorted by relevance
90 eEST, enumerator123 if (tech == eEST) { in s_CheckSpecialKeyword()198 tech = eEST; in x_GatherInfo()
57 CGeneModel a(isPlus() ? ePlus : eMinus, 0, isEST() ? CGeneModel::eEST : CGeneModel::eSR); in GetAlignment()137 if(align.Type()&CGeneModel::eEST) in CAlignCommon()603 …if((align.Type()&CGeneModel::eEST) && (int)editedmodel.Exons().size() == 1 && editedmodel.Limits()… in RemoveNotSupportedIntronsFromTranscript()1347 if((align.Type()&CGeneModel::eEST) && !m_filterest) in FilterAlignments()1645 if((align.Type()&CGeneModel::eEST) && !m_filterest) in FilterAlignments()1706 if((align.Type()&CGeneModel::eEST) && (int)align.Exons().size() == 1) { in FilterAlignments()1778 if((align.Type()&CGeneModel::eEST) && (int)align.Exons().size() == 1) { in FilterAlignments()2041 if(i->Type() == CGeneModel::eEST) { in GetCollapsedAlgnments()2357 ((align.Type()&CGeneModel::eEST) && !m_filterest) || in AddAlignment()2374 if(align.Type()&(CGeneModel::eEST|CGeneModel::emRNA)) in AddAlignment()[all …]
1278 …SetType(Type() | ((CGeneModel::eProt|CGeneModel::eSR|CGeneModel::eEST|CGeneModel::emRNA|CGeneModel… in Extend()1678 if ((type & (eSR|eEST|emRNA|eNotForChaining))!=0) return "Splign"; in TypeToString()1729 if ((a.Type() &CGeneModel::eEST)!=0) attributes["flags"] += ",EST"; in CollectAttributes()1848 else if (*f == "EST") a.SetType(a.Type()| CGeneModel::eEST); in ParseAttributes()
553 } else if (type&CGeneModel::eEST) { in create_ModelEvidence_user_object()
3066 else if(align.Type() == CGeneModel::eEST) in MakeChains()4568 SetType(Type() & (~(eSR | eEST | emRNA | eProt | eNotForChaining))); in CalculateSupportAndWeightFromMembers()4573 SetType(Type() | (align.Type() & (eSR | eEST | emRNA | eProt | eNotForChaining))); in CalculateSupportAndWeightFromMembers()5515 …if(align.Type() == CGeneModel::emRNA || align.Type() == CGeneModel::eEST || align.Type() == CGeneM… in ClipLowCoverageUTR()5651 …if(align.Type() == CGeneModel::emRNA || align.Type() == CGeneModel::eEST) { //OK to clip protein… in CalculateDropLimits()
364 eEST = 8, enumerator