Searched refs:eGapFiller (Results 1 – 3 of 3) sorted by relevance
550 if(!(editedmodel.Status()&CGeneModel::eGapFiller)) { //remove flanking bad introns AND exons in RemoveNotSupportedIntronsFromTranscript()614 if(editedmodel.Status()&CGeneModel::eGapFiller) { in RemoveNotSupportedIntronsFromTranscript()1421 if(align.Status()&CGeneModel::eGapFiller) { in FilterAlignments()1450 if(!(align.Status()&CGeneModel::eGapFiller)) { in FilterAlignments()2335 align.Status() &= ~CGeneModel::eGapFiller; in AddAlignment()2337 if((align.Type()&CGeneModel::eNotForChaining) && !(align.Status()&CGeneModel::eGapFiller)) in AddAlignment()2365 (align.Status()&CGeneModel::eGapFiller && sig == "GTAG" && in AddAlignment()2384 …R) || ((align.Type()&CGeneModel::eEST) && !(align.Status()&CGeneModel::eGapFiller) && m_collapsest… in AddAlignment()
1739 if ((a.Status()&CGeneModel::eGapFiller)!=0) attributes["flags"] += ",GapFiller"; in CollectAttributes()1859 else if (*f == "GapFiller") a.Status()|= CGeneModel::eGapFiller; in ParseAttributes()
386 eGapFiller = 4096, enumerator