Searched refs:eLeftConfirmed (Results 1 – 3 of 3) sorted by relevance
1571 if(chain.Status()&CGeneModel::eLeftConfirmed) in TrimAlignmentsIncludedInDifferentGenes()3041 if(align.Status()&CGeneModel::eLeftConfirmed) { in MakeChains()4607 …if(((Status()&eLeftConfirmed) == 0) && (!OpenLeftEnd() || ReadingFrame().Empty()) && (Strand() == … in RestoreTrimmedEnds()4996 Status() |= eLeftConfirmed; in SetConfirmedEnds()5314 if((Status()&eLeftConfirmed) && !right_end) in ClipToCap()5364 if((Status()&eLeftConfirmed) && !right_end) in ClipToPolyA()5559 …bool fivep_confirmed = (Strand() == ePlus) ? (Status()&eLeftConfirmed) : (Status()&eRightConfirmed… in ClipLowCoverageUTR()5589 …ol threep_confirmed = (Strand() == ePlus) ? (Status()&eRightConfirmed) : (Status()&eLeftConfirmed); in ClipLowCoverageUTR()5630 …bool fivep_confirmed = (Strand() == ePlus) ? (Status()&eLeftConfirmed) : (Status()&eRightConfirmed… in CalculateDropLimits()5631 …ol threep_confirmed = (Strand() == ePlus) ? (Status()&eRightConfirmed) : (Status()&eLeftConfirmed); in CalculateDropLimits()[all …]
1743 if ((a.Status()&CGeneModel::eLeftConfirmed)!=0) attributes["flags"] += ",LeftConfirmed"; in CollectAttributes()1862 else if (*f == "LeftConfirmed") a.Status() |= CGeneModel::eLeftConfirmed; in ParseAttributes()
390 eLeftConfirmed = 65536, enumerator