Searched refs:eMism (Results 1 – 5 of 5) sorted by relevance
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/gnomon/ |
H A D | gnomon_objmgr.cpp | 275 … indels.push_back(CInDelInfo(nuc_cur_start+pos, mismatch_len, CInDelInfo::eMism, v)); in CAlignModel() 278 …rt(indels.begin(), CInDelInfo(nuc_cur_end-pos-mismatch_len+1, mismatch_len, CInDelInfo::eMism, v)); in CAlignModel() 343 *indl = CInDelInfo(indl->Loc(), indl->Len(), CInDelInfo::eMism, new_seq); in CAlignModel() 346 … *indl = CInDelInfo(indl->Loc(), indl->Len(), CInDelInfo::eMism, new_seq.substr(0,indl->Len())); in CAlignModel() 350 …*indl_next = CInDelInfo(indl->InDelEnd(), indl_next->Len(), CInDelInfo::eMism, new_seq.substr(new_… in CAlignModel()
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H A D | glb_align.cpp | 101 … CInDelInfo indl(spos-len+sstart, len, CInDelInfo::eMism, string(query+qpos-len, len)); in GetInDels() 111 … CInDelInfo indl(spos-len+sstart, len, CInDelInfo::eMism, string(query+qpos-len, len)); in GetInDels()
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H A D | gnomon_model.cpp | 892 …indels.push_back(CInDelInfo(e->GetFrom(),indl->Len()-extra,CInDelInfo::eMism,indl->GetInDelV().sub… in RemoveExtraFShifts() 905 …() = CInDelInfo(indels.back().Loc(),indels.back().Len()-extra,CInDelInfo::eMism,indels.back().GetI… in RemoveExtraFShifts() 1665 indels.push_back(CInDelInfo(loc,len,CInDelInfo::eMism,seq)); in readGFF3Gap()
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H A D | chainer.cpp | 7543 erepl.push_back(CInDelInfo(loc, 1, CInDelInfo::eMism, string(1,c))); in MapOneModelToOrigContig() 7545 erepl.push_back(CInDelInfo(loc, 1, CInDelInfo::eMism, string(1,c))); in MapOneModelToOrigContig() 7549 erepl.back() = CInDelInfo(loc, s.size(), CInDelInfo::eMism, s); in MapOneModelToOrigContig()
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/algo/gnomon/ |
H A D | gnomon_model.hpp | 110 enum EType {eDel, eIns, eMism}; enumerator 120 bool IsMismatch() const { return m_type == eMism; } in IsMismatch()
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