Searched refs:eNotForChaining (Results 1 – 4 of 4) sorted by relevance
367 if(align.Type()&CGeneModel::eNotForChaining) { in ClipNotSupportedFlanks()993 if(align.Type()&CGeneModel::eNotForChaining) in FilterAlignments()1357 } else if(align.Type()&CGeneModel::eNotForChaining) { in FilterAlignments()1368 } else if(align.Type()&CGeneModel::eNotForChaining) { in FilterAlignments()1386 …if(align.Exons().empty() || (!good_alignment && !(align.Type()&CGeneModel::eNotForChaining)) || !A… in FilterAlignments()1396 if(intronnum > 0 && !(align.Type()&CGeneModel::eNotForChaining)) in FilterAlignments()1451 if(align.Type()&CGeneModel::eNotForChaining) in FilterAlignments()1463 if(!(align.Type()&CGeneModel::eNotForChaining)) { in FilterAlignments()2337 if((align.Type()&CGeneModel::eNotForChaining) && !(align.Status()&CGeneModel::eGapFiller)) in AddAlignment()
1278 …eProt|CGeneModel::eSR|CGeneModel::eEST|CGeneModel::emRNA|CGeneModel::eNotForChaining)&align.Type()… in Extend()1678 if ((type & (eSR|eEST|emRNA|eNotForChaining))!=0) return "Splign"; in TypeToString()1727 … if ((a.Type() &CGeneModel::eNotForChaining)!=0) attributes["flags"] += ",NotForChaining"; in CollectAttributes()1846 else if (*f == "NotForChaining") a.SetType(a.Type()| CGeneModel::eNotForChaining); in ParseAttributes()
4456 … if(align.Type()&eNotForChaining) // if TSA was clipped remove from support if possible in CalculateSupportAndWeightFromMembers()4568 SetType(Type() & (~(eSR | eEST | emRNA | eProt | eNotForChaining))); in CalculateSupportAndWeightFromMembers()4573 SetType(Type() | (align.Type() & (eSR | eEST | emRNA | eProt | eNotForChaining))); in CalculateSupportAndWeightFromMembers()5515 …A || align.Type() == CGeneModel::eEST || align.Type() == CGeneModel::eNotForChaining) { //OK to … in ClipLowCoverageUTR()6164 if(!(a->Status()&CGeneModel::eUnmodifiedAlign) && a->Type() != CGeneModel::eNotForChaining) in OverlapsSameAccessionAlignment()
367 eNotForChaining = 64, enumerator