Searched refs:ePolyA (Results 1 – 7 of 7) sorted by relevance
59 a.Status() |= CGeneModel::ePolyA; in GetAlignment()139 if(align.Status()&CGeneModel::ePolyA) in CAlignCommon()482 if((align.Status()&CGeneModel::ePolyA) && in ClipNotSupportedFlanks()486 align.Status() ^= CGeneModel::ePolyA; in ClipNotSupportedFlanks()643 if((align.Status()&CGeneModel::ePolyA) && in RemoveNotSupportedIntronsFromTranscript()647 align.Status() ^= CGeneModel::ePolyA; in RemoveNotSupportedIntronsFromTranscript()1470 align.Status() &= ~CGeneModel::ePolyA; in FilterAlignments()2083 if((guest.Status()&CGeneModel::ePolyA) || (host.Status()&CGeneModel::ePolyA)) { in GetCollapsedAlgnments()2084 … if((guest.Status()&CGeneModel::ePolyA) != (host.Status()&CGeneModel::ePolyA) in GetCollapsedAlgnments()2272 status = CGeneModel::ePolyA; in AddAlignment()[all …]
617 if((a.Status()&CGeneModel::ePolyA) != 0) in DescendingModelOrder()628 if((b.Status()&CGeneModel::ePolyA) != 0) in DescendingModelOrder()656 if((a.Status()&CGeneModel::ePolyA) != 0) in DescendingModelOrder()663 if((b.Status()&CGeneModel::ePolyA) != 0) in DescendingModelOrder()1463 if(chain.Status()&CGeneModel::ePolyA) { in TrimAlignmentsIncludedInDifferentGenes()2997 if(it->Status()&CGeneModel::ePolyA) { in MakeChains()3003 int status = CGeneModel::ePolyA; in MakeChains()3436 if(chain.Status()&CGeneModel::ePolyA) { in MakeChains()5385 Status() &= ~ePolyA; in ClipToPolyA()5408 Status() |= ePolyA; in ClipToPolyA()[all …]
503 if((algn.Status()&CGeneModel::ePolyA) != 0) in AddSupport()504 gene.Status() |= CGeneModel::ePolyA; in AddSupport()
447 Status() |= CGeneModel::ePolyA; in CAlignModel()
1411 if((Status()&ePolyA) == 0) in PolyALen()1734 if ((a.Status()&CGeneModel::ePolyA)!=0) attributes["flags"] += ",PolyA"; in CollectAttributes()1854 else if (*f == "PolyA") a.Status() |= CGeneModel::ePolyA; in ParseAttributes()
775 if (model.Status() & CAlignModel::ePolyA) { in AlignModelToSeqalign()
381 ePolyA = 128, enumerator900 m.Status() &= ~CGeneModel::ePolyA; in GetAlignParts()914 m.Status() &= ~CGeneModel::ePolyA; in GetAlignParts()922 if(algn.Status()&CGeneModel::ePolyA) { in GetAlignParts()924 parts.back().Status() |= CGeneModel::ePolyA; in GetAlignParts()926 parts.front().Status() |= CGeneModel::ePolyA; in GetAlignParts()