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Searched refs:ePolyA (Results 1 – 7 of 7) sorted by relevance

/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/gnomon/
H A Daligncollapser.cpp59 a.Status() |= CGeneModel::ePolyA; in GetAlignment()
139 if(align.Status()&CGeneModel::ePolyA) in CAlignCommon()
482 if((align.Status()&CGeneModel::ePolyA) && in ClipNotSupportedFlanks()
486 align.Status() ^= CGeneModel::ePolyA; in ClipNotSupportedFlanks()
643 if((align.Status()&CGeneModel::ePolyA) && in RemoveNotSupportedIntronsFromTranscript()
647 align.Status() ^= CGeneModel::ePolyA; in RemoveNotSupportedIntronsFromTranscript()
1470 align.Status() &= ~CGeneModel::ePolyA; in FilterAlignments()
2083 if((guest.Status()&CGeneModel::ePolyA) || (host.Status()&CGeneModel::ePolyA)) { in GetCollapsedAlgnments()
2084 … if((guest.Status()&CGeneModel::ePolyA) != (host.Status()&CGeneModel::ePolyA) in GetCollapsedAlgnments()
2272 status = CGeneModel::ePolyA; in AddAlignment()
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H A Dchainer.cpp617 if((a.Status()&CGeneModel::ePolyA) != 0) in DescendingModelOrder()
628 if((b.Status()&CGeneModel::ePolyA) != 0) in DescendingModelOrder()
656 if((a.Status()&CGeneModel::ePolyA) != 0) in DescendingModelOrder()
663 if((b.Status()&CGeneModel::ePolyA) != 0) in DescendingModelOrder()
1463 if(chain.Status()&CGeneModel::ePolyA) { in TrimAlignmentsIncludedInDifferentGenes()
2997 if(it->Status()&CGeneModel::ePolyA) { in MakeChains()
3003 int status = CGeneModel::ePolyA; in MakeChains()
3436 if(chain.Status()&CGeneModel::ePolyA) { in MakeChains()
5385 Status() &= ~ePolyA; in ClipToPolyA()
5408 Status() |= ePolyA; in ClipToPolyA()
[all …]
H A Dparse.cpp503 if((algn.Status()&CGeneModel::ePolyA) != 0) in AddSupport()
504 gene.Status() |= CGeneModel::ePolyA; in AddSupport()
H A Dgnomon_objmgr.cpp447 Status() |= CGeneModel::ePolyA; in CAlignModel()
H A Dgnomon_model.cpp1411 if((Status()&ePolyA) == 0) in PolyALen()
1734 if ((a.Status()&CGeneModel::ePolyA)!=0) attributes["flags"] += ",PolyA"; in CollectAttributes()
1854 else if (*f == "PolyA") a.Status() |= CGeneModel::ePolyA; in ParseAttributes()
H A Dasn1.cpp775 if (model.Status() & CAlignModel::ePolyA) { in AlignModelToSeqalign()
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/algo/gnomon/
H A Dgnomon_model.hpp381 ePolyA = 128, enumerator
900 m.Status() &= ~CGeneModel::ePolyA; in GetAlignParts()
914 m.Status() &= ~CGeneModel::ePolyA; in GetAlignParts()
922 if(algn.Status()&CGeneModel::ePolyA) { in GetAlignParts()
924 parts.back().Status() |= CGeneModel::ePolyA; in GetAlignParts()
926 parts.front().Status() |= CGeneModel::ePolyA; in GetAlignParts()