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Searched refs:eProtein (Results 1 – 25 of 139) sorted by relevance

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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/blast/unit_tests/seqdb_reader/
H A Dseqdb_lmdb_unit_test.cpp68 CSeqDB db("data/seqp_v5 data/wp_nr", CSeqDB::eProtein), in BOOST_AUTO_TEST_CASE()
78 CSeqDB db("data/seqp_v5", CSeqDB::eProtein, 0, 0, true, gi_list); in BOOST_AUTO_TEST_CASE()
106 CSeqDB db("data/seqp_v5 data/wp_nr_v5", CSeqDB::eProtein, in BOOST_AUTO_TEST_CASE()
127 CSeqDB db("data/prot_alias_v5", CSeqDB::eProtein, 0, 0, true); in BOOST_AUTO_TEST_CASE()
138 CSeqDB db("data/test_seqidlist_v5", CSeqDB::eProtein, 0, 0, true); in BOOST_AUTO_TEST_CASE()
160 CSeqDB db("data/alias_2_v5", CSeqDB::eProtein, 0, 0, true); in BOOST_AUTO_TEST_CASE()
227 CSeqDB db("data/seqp_v5 data/wp_nr_v5", CSeqDB::eProtein, n_list); in BOOST_AUTO_TEST_CASE()
251 CSeqDB db("data/prot_alias_v5", CSeqDB::eProtein, n_list); in BOOST_AUTO_TEST_CASE()
270 CSeqDB db("data/prot_alias_v5", CSeqDB::eProtein, n_list); in BOOST_AUTO_TEST_CASE()
339 CSeqDB wp("data/wp_nr_v5", CSeqDB::eProtein); in BOOST_AUTO_TEST_CASE()
[all …]
H A Dseqdb_unit_test.cpp841 CSeqDB nr("nr", CSeqDB::eProtein); in BOOST_AUTO_TEST_CASE()
891 CSeqDB nr(kDb, CSeqDB::eProtein); in BOOST_AUTO_TEST_CASE()
1332 CSeqDB db1("nr", CSeqDB::eProtein); in BOOST_AUTO_TEST_CASE()
1333 CSeqDB db2("pdb", CSeqDB::eProtein); in BOOST_AUTO_TEST_CASE()
1340 CSeqDB db1("nr", CSeqDB::eProtein); in BOOST_AUTO_TEST_CASE()
1343 CSeqDB db3("pdb", CSeqDB::eProtein); in BOOST_AUTO_TEST_CASE()
1574 CSeqDB db("", CSeqDB::eProtein); in BOOST_AUTO_TEST_CASE()
2116 CSeqDB db("nr", CSeqDB::eProtein); in BOOST_AUTO_TEST_CASE()
3523 CSeqDB p1("nr", CSeqDB::eProtein); in BOOST_AUTO_TEST_CASE()
3686 CSeqDB nr("nr", CSeqDB::eProtein); in BOOST_AUTO_TEST_CASE()
[all …]
/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/algo/blast/unit_tests/seqdb_reader/
H A Dseqdb_lmdb_unit_test.cpp68 CSeqDB db("data/seqp_v5 data/wp_nr", CSeqDB::eProtein), in BOOST_AUTO_TEST_CASE()
78 CSeqDB db("data/seqp_v5", CSeqDB::eProtein, 0, 0, true, gi_list); in BOOST_AUTO_TEST_CASE()
106 CSeqDB db("data/seqp_v5 data/wp_nr_v5", CSeqDB::eProtein, in BOOST_AUTO_TEST_CASE()
127 CSeqDB db("data/prot_alias_v5", CSeqDB::eProtein, 0, 0, true); in BOOST_AUTO_TEST_CASE()
138 CSeqDB db("data/test_seqidlist_v5", CSeqDB::eProtein, 0, 0, true); in BOOST_AUTO_TEST_CASE()
160 CSeqDB db("data/alias_2_v5", CSeqDB::eProtein, 0, 0, true); in BOOST_AUTO_TEST_CASE()
227 CSeqDB db("data/seqp_v5 data/wp_nr_v5", CSeqDB::eProtein, n_list); in BOOST_AUTO_TEST_CASE()
251 CSeqDB db("data/prot_alias_v5", CSeqDB::eProtein, n_list); in BOOST_AUTO_TEST_CASE()
270 CSeqDB db("data/prot_alias_v5", CSeqDB::eProtein, n_list); in BOOST_AUTO_TEST_CASE()
339 CSeqDB wp("data/wp_nr_v5", CSeqDB::eProtein); in BOOST_AUTO_TEST_CASE()
[all …]
H A Dseqdb_unit_test.cpp841 CSeqDB nr("nr", CSeqDB::eProtein); in BOOST_AUTO_TEST_CASE()
891 CSeqDB nr(kDb, CSeqDB::eProtein); in BOOST_AUTO_TEST_CASE()
1332 CSeqDB db1("nr", CSeqDB::eProtein); in BOOST_AUTO_TEST_CASE()
1333 CSeqDB db2("pdb", CSeqDB::eProtein); in BOOST_AUTO_TEST_CASE()
1340 CSeqDB db1("nr", CSeqDB::eProtein); in BOOST_AUTO_TEST_CASE()
1343 CSeqDB db3("pdb", CSeqDB::eProtein); in BOOST_AUTO_TEST_CASE()
1574 CSeqDB db("", CSeqDB::eProtein); in BOOST_AUTO_TEST_CASE()
2116 CSeqDB db("nr", CSeqDB::eProtein); in BOOST_AUTO_TEST_CASE()
3522 CSeqDB p1("nr", CSeqDB::eProtein); in BOOST_AUTO_TEST_CASE()
3685 CSeqDB nr("nr", CSeqDB::eProtein); in BOOST_AUTO_TEST_CASE()
[all …]
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/blast/blastdb_format/unit_test/
H A Dseq_writer_unit_test.cpp52 CSeqDB db("data/mask-data-db", CSeqDB::eProtein); in BOOST_AUTO_TEST_CASE()
60 CSeqDB db("data/mask-data-db", CSeqDB::eProtein); in BOOST_AUTO_TEST_CASE()
67 CSeqDB db("data/mask-data-db", CSeqDB::eProtein); in BOOST_AUTO_TEST_CASE()
76 CSeqDB db("data/mask-data-db", CSeqDB::eProtein); in BOOST_AUTO_TEST_CASE()
105 CSeqDB db("data/seqp", CSeqDB::eProtein); in BOOST_AUTO_TEST_CASE()
147 CSeqDB db("data/seqp", CSeqDB::eProtein); in BOOST_AUTO_TEST_CASE()
191 CSeqDB db("data/seqp", CSeqDB::eProtein); in BOOST_AUTO_TEST_CASE()
223 CSeqDB db("data/seqp", CSeqDB::eProtein); in BOOST_AUTO_TEST_CASE()
255 CSeqDB db("nr", CSeqDB::eProtein); in BOOST_AUTO_TEST_CASE()
280 CSeqDB db("data/seqp", CSeqDB::eProtein); in BOOST_AUTO_TEST_CASE()
[all …]
H A Dseq_formatter_unit_test.cpp52 CSeqDB db("data/mask-data-db", CSeqDB::eProtein); in BOOST_AUTO_TEST_CASE()
60 CSeqDB db("data/mask-data-db", CSeqDB::eProtein); in BOOST_AUTO_TEST_CASE()
67 CSeqDB db("data/mask-data-db", CSeqDB::eProtein); in BOOST_AUTO_TEST_CASE()
96 CSeqDB db("data/seqp", CSeqDB::eProtein); in BOOST_AUTO_TEST_CASE()
140 CSeqDB db("data/seqp", CSeqDB::eProtein); in BOOST_AUTO_TEST_CASE()
186 CSeqDB db("data/seqp", CSeqDB::eProtein); in BOOST_AUTO_TEST_CASE()
220 CSeqDB db("data/seqp", CSeqDB::eProtein); in BOOST_AUTO_TEST_CASE()
254 CSeqDB db("nr", CSeqDB::eProtein); in BOOST_AUTO_TEST_CASE()
281 CSeqDB db("data/seqp", CSeqDB::eProtein); in BOOST_AUTO_TEST_CASE()
314 CSeqDB db("data/mask-data-db", CSeqDB::eProtein); in BOOST_AUTO_TEST_CASE()
[all …]
/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objtools/blast/blastdb_format/unit_test/
H A Dseq_writer_unit_test.cpp52 CSeqDB db("data/mask-data-db", CSeqDB::eProtein); in BOOST_AUTO_TEST_CASE()
60 CSeqDB db("data/mask-data-db", CSeqDB::eProtein); in BOOST_AUTO_TEST_CASE()
67 CSeqDB db("data/mask-data-db", CSeqDB::eProtein); in BOOST_AUTO_TEST_CASE()
76 CSeqDB db("data/mask-data-db", CSeqDB::eProtein); in BOOST_AUTO_TEST_CASE()
105 CSeqDB db("data/seqp", CSeqDB::eProtein); in BOOST_AUTO_TEST_CASE()
147 CSeqDB db("data/seqp", CSeqDB::eProtein); in BOOST_AUTO_TEST_CASE()
191 CSeqDB db("data/seqp", CSeqDB::eProtein); in BOOST_AUTO_TEST_CASE()
223 CSeqDB db("data/seqp", CSeqDB::eProtein); in BOOST_AUTO_TEST_CASE()
255 CSeqDB db("nr", CSeqDB::eProtein); in BOOST_AUTO_TEST_CASE()
280 CSeqDB db("data/seqp", CSeqDB::eProtein); in BOOST_AUTO_TEST_CASE()
[all …]
H A Dseq_formatter_unit_test.cpp52 CSeqDB db("data/mask-data-db", CSeqDB::eProtein); in BOOST_AUTO_TEST_CASE()
60 CSeqDB db("data/mask-data-db", CSeqDB::eProtein); in BOOST_AUTO_TEST_CASE()
67 CSeqDB db("data/mask-data-db", CSeqDB::eProtein); in BOOST_AUTO_TEST_CASE()
96 CSeqDB db("data/seqp", CSeqDB::eProtein); in BOOST_AUTO_TEST_CASE()
140 CSeqDB db("data/seqp", CSeqDB::eProtein); in BOOST_AUTO_TEST_CASE()
186 CSeqDB db("data/seqp", CSeqDB::eProtein); in BOOST_AUTO_TEST_CASE()
220 CSeqDB db("data/seqp", CSeqDB::eProtein); in BOOST_AUTO_TEST_CASE()
254 CSeqDB db("nr", CSeqDB::eProtein); in BOOST_AUTO_TEST_CASE()
281 CSeqDB db("data/seqp", CSeqDB::eProtein); in BOOST_AUTO_TEST_CASE()
314 CSeqDB db("data/mask-data-db", CSeqDB::eProtein); in BOOST_AUTO_TEST_CASE()
[all …]
/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/algo/blast/proteinkmer/unit_test/
H A Dproteinkmer_unit_test.cpp97 CRef<CSeqDB> seqdb(new CSeqDB("data/nr_test", CSeqDB::eProtein)); in BOOST_AUTO_TEST_CASE()
160 CRef<CSeqDB> seqdb(new CSeqDB("data/nr_test", CSeqDB::eProtein)); in BOOST_AUTO_TEST_CASE()
237 CRef<CSeqDB> seqdb(new CSeqDB("data/nr_test", CSeqDB::eProtein)); in BOOST_AUTO_TEST_CASE()
536 CRef<CSeqDB> seqdb(new CSeqDB("data/nr_test", CSeqDB::eProtein)); in BOOST_AUTO_TEST_CASE()
592 CRef<CSeqDB> seqdb(new CSeqDB("data/manyXs", CSeqDB::eProtein)); in BOOST_AUTO_TEST_CASE()
612 CRef<CSeqDB> seqdb(new CSeqDB("data/nr_test", CSeqDB::eProtein)); in BOOST_AUTO_TEST_CASE()
641 CRef<CSeqDB> seqdb(new CSeqDB("data/nr_test", CSeqDB::eProtein)); in BOOST_AUTO_TEST_CASE()
670 CRef<CSeqDB> seqdb(new CSeqDB("data/nr_test", CSeqDB::eProtein)); in BOOST_AUTO_TEST_CASE()
701 CRef<CSeqDB> seqdb(new CSeqDB("data/nr_test", CSeqDB::eProtein)); in BOOST_AUTO_TEST_CASE()
798 CRef<CSeqDB> seqdb(new CSeqDB("data/nr_test", CSeqDB::eProtein)); in BOOST_AUTO_TEST_CASE()
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/blast/proteinkmer/unit_test/
H A Dproteinkmer_unit_test.cpp97 CRef<CSeqDB> seqdb(new CSeqDB("data/nr_test", CSeqDB::eProtein)); in BOOST_AUTO_TEST_CASE()
160 CRef<CSeqDB> seqdb(new CSeqDB("data/nr_test", CSeqDB::eProtein)); in BOOST_AUTO_TEST_CASE()
237 CRef<CSeqDB> seqdb(new CSeqDB("data/nr_test", CSeqDB::eProtein)); in BOOST_AUTO_TEST_CASE()
536 CRef<CSeqDB> seqdb(new CSeqDB("data/nr_test", CSeqDB::eProtein)); in BOOST_AUTO_TEST_CASE()
592 CRef<CSeqDB> seqdb(new CSeqDB("data/manyXs", CSeqDB::eProtein)); in BOOST_AUTO_TEST_CASE()
612 CRef<CSeqDB> seqdb(new CSeqDB("data/nr_test", CSeqDB::eProtein)); in BOOST_AUTO_TEST_CASE()
641 CRef<CSeqDB> seqdb(new CSeqDB("data/nr_test", CSeqDB::eProtein)); in BOOST_AUTO_TEST_CASE()
670 CRef<CSeqDB> seqdb(new CSeqDB("data/nr_test", CSeqDB::eProtein)); in BOOST_AUTO_TEST_CASE()
701 CRef<CSeqDB> seqdb(new CSeqDB("data/nr_test", CSeqDB::eProtein)); in BOOST_AUTO_TEST_CASE()
798 CRef<CSeqDB> seqdb(new CSeqDB("data/nr_test", CSeqDB::eProtein)); in BOOST_AUTO_TEST_CASE()
[all …]
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/blast/seqdb_writer/unit_test/
H A Dwritedb_unit_test.cpp1103 CWriteDB::eProtein, in BOOST_AUTO_TEST_CASE()
1117 CWriteDB::eProtein, in BOOST_AUTO_TEST_CASE()
1180 CWriteDB::eProtein, in BOOST_AUTO_TEST_CASE()
1216 CWriteDB::eProtein, in BOOST_AUTO_TEST_CASE()
1233 CSeqDB db2(nm, CSeqDB::eProtein); in BOOST_AUTO_TEST_CASE()
1269 CWriteDB::eProtein, in BOOST_AUTO_TEST_CASE()
1767 CWriteDB::eProtein, in BOOST_AUTO_TEST_CASE()
2628 CSeqDB db(kDbName, CSeqDB::eProtein); in BOOST_AUTO_TEST_CASE()
2951 CSeqDB seqdb(dbname, CSeqDB::eProtein); in BOOST_AUTO_TEST_CASE()
3010 CSeqDB seqdb(dbname, CSeqDB::eProtein); in BOOST_AUTO_TEST_CASE()
[all …]
/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objtools/blast/seqdb_writer/unit_test/
H A Dwritedb_unit_test.cpp1103 CWriteDB::eProtein, in BOOST_AUTO_TEST_CASE()
1117 CWriteDB::eProtein, in BOOST_AUTO_TEST_CASE()
1180 CWriteDB::eProtein, in BOOST_AUTO_TEST_CASE()
1216 CWriteDB::eProtein, in BOOST_AUTO_TEST_CASE()
1233 CSeqDB db2(nm, CSeqDB::eProtein); in BOOST_AUTO_TEST_CASE()
1269 CWriteDB::eProtein, in BOOST_AUTO_TEST_CASE()
1767 CWriteDB::eProtein, in BOOST_AUTO_TEST_CASE()
2628 CSeqDB db(kDbName, CSeqDB::eProtein); in BOOST_AUTO_TEST_CASE()
2951 CSeqDB seqdb(dbname, CSeqDB::eProtein); in BOOST_AUTO_TEST_CASE()
3010 CSeqDB seqdb(dbname, CSeqDB::eProtein); in BOOST_AUTO_TEST_CASE()
[all …]
/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/algo/blast/unit_tests/blast_mt/
H A Dblast_mt_unit_test.cpp121 CRef<CSeqDB> seqdb(new CSeqDB(m_db, m_isProtein?CSeqDB::eProtein:CSeqDB::eNucleotide)); in Main()
148 CRef<CSeqDB> seqdb(new CSeqDB(db, isProtein?CSeqDB::eProtein:CSeqDB::eNucleotide)); in s_MTDataLoaderTest()
207 CRef<CSeqDB> seqdb(new CSeqDB(db, isProtein?CSeqDB::eProtein:CSeqDB::eNucleotide)); in s_MTDataLoaderTest2()
256 CRef<CSeqDB> seqdb(new CSeqDB(m_db, m_isProtein?CSeqDB::eProtein:CSeqDB::eNucleotide)); in Main()
274 CRef<CSeqDB> seqdb(new CSeqDB(db, isProtein?CSeqDB::eProtein:CSeqDB::eNucleotide)); in s_MTSeqDBTest()
322 CRef<CSeqDB> seqdb(new CSeqDB(m_db, m_isProtein?CSeqDB::eProtein:CSeqDB::eNucleotide)); in Main()
342 CRef<CSeqDB> seqdb(new CSeqDB(db, isProtein?CSeqDB::eProtein:CSeqDB::eNucleotide)); in s_MTSeqDBTest2()
398 CRef<CSeqDB> seqdb(new CSeqDB(db, isProtein?CSeqDB::eProtein:CSeqDB::eNucleotide)); in s_MTSeqDBTest3()
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/blast/unit_tests/blast_mt/
H A Dblast_mt_unit_test.cpp121 CRef<CSeqDB> seqdb(new CSeqDB(m_db, m_isProtein?CSeqDB::eProtein:CSeqDB::eNucleotide)); in Main()
148 CRef<CSeqDB> seqdb(new CSeqDB(db, isProtein?CSeqDB::eProtein:CSeqDB::eNucleotide)); in s_MTDataLoaderTest()
207 CRef<CSeqDB> seqdb(new CSeqDB(db, isProtein?CSeqDB::eProtein:CSeqDB::eNucleotide)); in s_MTDataLoaderTest2()
256 CRef<CSeqDB> seqdb(new CSeqDB(m_db, m_isProtein?CSeqDB::eProtein:CSeqDB::eNucleotide)); in Main()
274 CRef<CSeqDB> seqdb(new CSeqDB(db, isProtein?CSeqDB::eProtein:CSeqDB::eNucleotide)); in s_MTSeqDBTest()
322 CRef<CSeqDB> seqdb(new CSeqDB(m_db, m_isProtein?CSeqDB::eProtein:CSeqDB::eNucleotide)); in Main()
342 CRef<CSeqDB> seqdb(new CSeqDB(db, isProtein?CSeqDB::eProtein:CSeqDB::eNucleotide)); in s_MTSeqDBTest2()
398 CRef<CSeqDB> seqdb(new CSeqDB(db, isProtein?CSeqDB::eProtein:CSeqDB::eNucleotide)); in s_MTSeqDBTest3()
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/data_loaders/blastdb/
H A Dbdbloader_rmt.cpp70 case CRemoteBlastDbDataLoader::eProtein: return "Protein"; in DbTypeToStr()
81 case CRemoteBlastDbDataLoader::eProtein: return CSeqDB::eProtein; in DbTypeToSeqType()
91 case CSeqDB::eProtein: return CRemoteBlastDbDataLoader::eProtein; in SeqTypeToDbType()
337 dbtype = CRemoteBlastDbDataLoader::eProtein; in CreateAndRegister()
H A Dbdbloader.cpp107 case CBlastDbDataLoader::eProtein: return "Protein"; in DbTypeToStr()
118 case CBlastDbDataLoader::eProtein: return CSeqDB::eProtein; in DbTypeToSeqType()
128 case CSeqDB::eProtein: return CBlastDbDataLoader::eProtein; in SeqTypeToDbType()
340 case CBlastDbDataLoader::eProtein: return CSeq_inst::eMol_aa; in GetSequenceType()
353 case CBlastDbDataLoader::eProtein: retval = CSeq_inst::eMol_aa; break; in GetSequenceTypes()
546 dbtype = CBlastDbDataLoader::eProtein; in CreateAndRegister()
/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objtools/data_loaders/blastdb/
H A Dbdbloader_rmt.cpp70 case CRemoteBlastDbDataLoader::eProtein: return "Protein"; in DbTypeToStr()
81 case CRemoteBlastDbDataLoader::eProtein: return CSeqDB::eProtein; in DbTypeToSeqType()
91 case CSeqDB::eProtein: return CRemoteBlastDbDataLoader::eProtein; in SeqTypeToDbType()
337 dbtype = CRemoteBlastDbDataLoader::eProtein; in CreateAndRegister()
H A Dbdbloader.cpp107 case CBlastDbDataLoader::eProtein: return "Protein"; in DbTypeToStr()
118 case CBlastDbDataLoader::eProtein: return CSeqDB::eProtein; in DbTypeToSeqType()
128 case CSeqDB::eProtein: return CBlastDbDataLoader::eProtein; in SeqTypeToDbType()
340 case CBlastDbDataLoader::eProtein: return CSeq_inst::eMol_aa; in GetSequenceType()
353 case CBlastDbDataLoader::eProtein: retval = CSeq_inst::eMol_aa; break; in GetSequenceTypes()
546 dbtype = CBlastDbDataLoader::eProtein; in CreateAndRegister()
/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/algo/blast/blastinput/
H A Dblast_scope_src.cpp135 ? CBlastDbDataLoader::eProtein in CBlastScopeSource()
147 ? CBlastDbDataLoader::eProtein in CBlastScopeSource()
154 : m_Config(static_cast<bool>(db_handle->GetSequenceType() == CSeqDB::eProtein)) in CBlastScopeSource()
227 db_handle->GetSequenceType() == CSeqDB::eProtein in x_InitBlastDatabaseDataLoader()
228 ? CBlastDbDataLoader::eProtein in x_InitBlastDatabaseDataLoader()
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/blast/blastinput/
H A Dblast_scope_src.cpp135 ? CBlastDbDataLoader::eProtein in CBlastScopeSource()
147 ? CBlastDbDataLoader::eProtein in CBlastScopeSource()
154 : m_Config(static_cast<bool>(db_handle->GetSequenceType() == CSeqDB::eProtein)) in CBlastScopeSource()
227 db_handle->GetSequenceType() == CSeqDB::eProtein in x_InitBlastDatabaseDataLoader()
228 ? CBlastDbDataLoader::eProtein in x_InitBlastDatabaseDataLoader()
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/app/cn3d/
H A Dmolecule.hpp77 eProtein = ncbi::objects::CBiomol_descr::eMolecule_type_protein, enumerator
115 bool IsProtein(void) const { return (type == eProtein); } in IsProtein()
117 …bool IsBiopolymer(void) const { return (type == eProtein || type == eDNA || type == eRNA || type =… in IsBiopolymer()
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/blast/seqdb_reader/demo/
H A Dseqdb_demo.cpp80 CSeqDB nr("nr", CSeqDB::eProtein); in Run()
131 CSeqDB sp("swissprot", CSeqDB::eProtein); in Run()
182 CSeqDB sp("swissprot", CSeqDB::eProtein); in Run()
297 sm_is_protein = (db.GetSequenceType() == CSeqDB::eProtein); in Init()
602 if (sp.GetSequenceType() == CSeqDB::eProtein) { in Run()
719 CSeqDB sp("swissprot", CSeqDB::eProtein); in Run()
/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objtools/blast/seqdb_reader/demo/
H A Dseqdb_demo.cpp80 CSeqDB nr("nr", CSeqDB::eProtein); in Run()
131 CSeqDB sp("swissprot", CSeqDB::eProtein); in Run()
182 CSeqDB sp("swissprot", CSeqDB::eProtein); in Run()
297 sm_is_protein = (db.GetSequenceType() == CSeqDB::eProtein); in Init()
602 if (sp.GetSequenceType() == CSeqDB::eProtein) { in Run()
719 CSeqDB sp("swissprot", CSeqDB::eProtein); in Run()
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/align_format/unit_test/
H A Dshowalign_unit_test.cpp97 const CBlastDbDataLoader::EDbType kDbType(CBlastDbDataLoader::eProtein); in BOOST_AUTO_TEST_CASE()
103 ds.SetDbType((kDbType == CBlastDbDataLoader::eProtein)); in BOOST_AUTO_TEST_CASE()
130 const CBlastDbDataLoader::EDbType kDbType(CBlastDbDataLoader::eProtein); in BOOST_AUTO_TEST_CASE()
136 ds.SetDbType((kDbType == CBlastDbDataLoader::eProtein)); in BOOST_AUTO_TEST_CASE()
/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objtools/align_format/unit_test/
H A Dshowalign_unit_test.cpp97 const CBlastDbDataLoader::EDbType kDbType(CBlastDbDataLoader::eProtein); in BOOST_AUTO_TEST_CASE()
103 ds.SetDbType((kDbType == CBlastDbDataLoader::eProtein)); in BOOST_AUTO_TEST_CASE()
130 const CBlastDbDataLoader::EDbType kDbType(CBlastDbDataLoader::eProtein); in BOOST_AUTO_TEST_CASE()
136 ds.SetDbType((kDbType == CBlastDbDataLoader::eProtein)); in BOOST_AUTO_TEST_CASE()

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