/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/blast/unit_tests/seqdb_reader/ |
H A D | seqdb_lmdb_unit_test.cpp | 68 CSeqDB db("data/seqp_v5 data/wp_nr", CSeqDB::eProtein), in BOOST_AUTO_TEST_CASE() 78 CSeqDB db("data/seqp_v5", CSeqDB::eProtein, 0, 0, true, gi_list); in BOOST_AUTO_TEST_CASE() 106 CSeqDB db("data/seqp_v5 data/wp_nr_v5", CSeqDB::eProtein, in BOOST_AUTO_TEST_CASE() 127 CSeqDB db("data/prot_alias_v5", CSeqDB::eProtein, 0, 0, true); in BOOST_AUTO_TEST_CASE() 138 CSeqDB db("data/test_seqidlist_v5", CSeqDB::eProtein, 0, 0, true); in BOOST_AUTO_TEST_CASE() 160 CSeqDB db("data/alias_2_v5", CSeqDB::eProtein, 0, 0, true); in BOOST_AUTO_TEST_CASE() 227 CSeqDB db("data/seqp_v5 data/wp_nr_v5", CSeqDB::eProtein, n_list); in BOOST_AUTO_TEST_CASE() 251 CSeqDB db("data/prot_alias_v5", CSeqDB::eProtein, n_list); in BOOST_AUTO_TEST_CASE() 270 CSeqDB db("data/prot_alias_v5", CSeqDB::eProtein, n_list); in BOOST_AUTO_TEST_CASE() 339 CSeqDB wp("data/wp_nr_v5", CSeqDB::eProtein); in BOOST_AUTO_TEST_CASE() [all …]
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H A D | seqdb_unit_test.cpp | 841 CSeqDB nr("nr", CSeqDB::eProtein); in BOOST_AUTO_TEST_CASE() 891 CSeqDB nr(kDb, CSeqDB::eProtein); in BOOST_AUTO_TEST_CASE() 1332 CSeqDB db1("nr", CSeqDB::eProtein); in BOOST_AUTO_TEST_CASE() 1333 CSeqDB db2("pdb", CSeqDB::eProtein); in BOOST_AUTO_TEST_CASE() 1340 CSeqDB db1("nr", CSeqDB::eProtein); in BOOST_AUTO_TEST_CASE() 1343 CSeqDB db3("pdb", CSeqDB::eProtein); in BOOST_AUTO_TEST_CASE() 1574 CSeqDB db("", CSeqDB::eProtein); in BOOST_AUTO_TEST_CASE() 2116 CSeqDB db("nr", CSeqDB::eProtein); in BOOST_AUTO_TEST_CASE() 3523 CSeqDB p1("nr", CSeqDB::eProtein); in BOOST_AUTO_TEST_CASE() 3686 CSeqDB nr("nr", CSeqDB::eProtein); in BOOST_AUTO_TEST_CASE() [all …]
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/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/algo/blast/unit_tests/seqdb_reader/ |
H A D | seqdb_lmdb_unit_test.cpp | 68 CSeqDB db("data/seqp_v5 data/wp_nr", CSeqDB::eProtein), in BOOST_AUTO_TEST_CASE() 78 CSeqDB db("data/seqp_v5", CSeqDB::eProtein, 0, 0, true, gi_list); in BOOST_AUTO_TEST_CASE() 106 CSeqDB db("data/seqp_v5 data/wp_nr_v5", CSeqDB::eProtein, in BOOST_AUTO_TEST_CASE() 127 CSeqDB db("data/prot_alias_v5", CSeqDB::eProtein, 0, 0, true); in BOOST_AUTO_TEST_CASE() 138 CSeqDB db("data/test_seqidlist_v5", CSeqDB::eProtein, 0, 0, true); in BOOST_AUTO_TEST_CASE() 160 CSeqDB db("data/alias_2_v5", CSeqDB::eProtein, 0, 0, true); in BOOST_AUTO_TEST_CASE() 227 CSeqDB db("data/seqp_v5 data/wp_nr_v5", CSeqDB::eProtein, n_list); in BOOST_AUTO_TEST_CASE() 251 CSeqDB db("data/prot_alias_v5", CSeqDB::eProtein, n_list); in BOOST_AUTO_TEST_CASE() 270 CSeqDB db("data/prot_alias_v5", CSeqDB::eProtein, n_list); in BOOST_AUTO_TEST_CASE() 339 CSeqDB wp("data/wp_nr_v5", CSeqDB::eProtein); in BOOST_AUTO_TEST_CASE() [all …]
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H A D | seqdb_unit_test.cpp | 841 CSeqDB nr("nr", CSeqDB::eProtein); in BOOST_AUTO_TEST_CASE() 891 CSeqDB nr(kDb, CSeqDB::eProtein); in BOOST_AUTO_TEST_CASE() 1332 CSeqDB db1("nr", CSeqDB::eProtein); in BOOST_AUTO_TEST_CASE() 1333 CSeqDB db2("pdb", CSeqDB::eProtein); in BOOST_AUTO_TEST_CASE() 1340 CSeqDB db1("nr", CSeqDB::eProtein); in BOOST_AUTO_TEST_CASE() 1343 CSeqDB db3("pdb", CSeqDB::eProtein); in BOOST_AUTO_TEST_CASE() 1574 CSeqDB db("", CSeqDB::eProtein); in BOOST_AUTO_TEST_CASE() 2116 CSeqDB db("nr", CSeqDB::eProtein); in BOOST_AUTO_TEST_CASE() 3522 CSeqDB p1("nr", CSeqDB::eProtein); in BOOST_AUTO_TEST_CASE() 3685 CSeqDB nr("nr", CSeqDB::eProtein); in BOOST_AUTO_TEST_CASE() [all …]
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/blast/blastdb_format/unit_test/ |
H A D | seq_writer_unit_test.cpp | 52 CSeqDB db("data/mask-data-db", CSeqDB::eProtein); in BOOST_AUTO_TEST_CASE() 60 CSeqDB db("data/mask-data-db", CSeqDB::eProtein); in BOOST_AUTO_TEST_CASE() 67 CSeqDB db("data/mask-data-db", CSeqDB::eProtein); in BOOST_AUTO_TEST_CASE() 76 CSeqDB db("data/mask-data-db", CSeqDB::eProtein); in BOOST_AUTO_TEST_CASE() 105 CSeqDB db("data/seqp", CSeqDB::eProtein); in BOOST_AUTO_TEST_CASE() 147 CSeqDB db("data/seqp", CSeqDB::eProtein); in BOOST_AUTO_TEST_CASE() 191 CSeqDB db("data/seqp", CSeqDB::eProtein); in BOOST_AUTO_TEST_CASE() 223 CSeqDB db("data/seqp", CSeqDB::eProtein); in BOOST_AUTO_TEST_CASE() 255 CSeqDB db("nr", CSeqDB::eProtein); in BOOST_AUTO_TEST_CASE() 280 CSeqDB db("data/seqp", CSeqDB::eProtein); in BOOST_AUTO_TEST_CASE() [all …]
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H A D | seq_formatter_unit_test.cpp | 52 CSeqDB db("data/mask-data-db", CSeqDB::eProtein); in BOOST_AUTO_TEST_CASE() 60 CSeqDB db("data/mask-data-db", CSeqDB::eProtein); in BOOST_AUTO_TEST_CASE() 67 CSeqDB db("data/mask-data-db", CSeqDB::eProtein); in BOOST_AUTO_TEST_CASE() 96 CSeqDB db("data/seqp", CSeqDB::eProtein); in BOOST_AUTO_TEST_CASE() 140 CSeqDB db("data/seqp", CSeqDB::eProtein); in BOOST_AUTO_TEST_CASE() 186 CSeqDB db("data/seqp", CSeqDB::eProtein); in BOOST_AUTO_TEST_CASE() 220 CSeqDB db("data/seqp", CSeqDB::eProtein); in BOOST_AUTO_TEST_CASE() 254 CSeqDB db("nr", CSeqDB::eProtein); in BOOST_AUTO_TEST_CASE() 281 CSeqDB db("data/seqp", CSeqDB::eProtein); in BOOST_AUTO_TEST_CASE() 314 CSeqDB db("data/mask-data-db", CSeqDB::eProtein); in BOOST_AUTO_TEST_CASE() [all …]
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/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objtools/blast/blastdb_format/unit_test/ |
H A D | seq_writer_unit_test.cpp | 52 CSeqDB db("data/mask-data-db", CSeqDB::eProtein); in BOOST_AUTO_TEST_CASE() 60 CSeqDB db("data/mask-data-db", CSeqDB::eProtein); in BOOST_AUTO_TEST_CASE() 67 CSeqDB db("data/mask-data-db", CSeqDB::eProtein); in BOOST_AUTO_TEST_CASE() 76 CSeqDB db("data/mask-data-db", CSeqDB::eProtein); in BOOST_AUTO_TEST_CASE() 105 CSeqDB db("data/seqp", CSeqDB::eProtein); in BOOST_AUTO_TEST_CASE() 147 CSeqDB db("data/seqp", CSeqDB::eProtein); in BOOST_AUTO_TEST_CASE() 191 CSeqDB db("data/seqp", CSeqDB::eProtein); in BOOST_AUTO_TEST_CASE() 223 CSeqDB db("data/seqp", CSeqDB::eProtein); in BOOST_AUTO_TEST_CASE() 255 CSeqDB db("nr", CSeqDB::eProtein); in BOOST_AUTO_TEST_CASE() 280 CSeqDB db("data/seqp", CSeqDB::eProtein); in BOOST_AUTO_TEST_CASE() [all …]
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H A D | seq_formatter_unit_test.cpp | 52 CSeqDB db("data/mask-data-db", CSeqDB::eProtein); in BOOST_AUTO_TEST_CASE() 60 CSeqDB db("data/mask-data-db", CSeqDB::eProtein); in BOOST_AUTO_TEST_CASE() 67 CSeqDB db("data/mask-data-db", CSeqDB::eProtein); in BOOST_AUTO_TEST_CASE() 96 CSeqDB db("data/seqp", CSeqDB::eProtein); in BOOST_AUTO_TEST_CASE() 140 CSeqDB db("data/seqp", CSeqDB::eProtein); in BOOST_AUTO_TEST_CASE() 186 CSeqDB db("data/seqp", CSeqDB::eProtein); in BOOST_AUTO_TEST_CASE() 220 CSeqDB db("data/seqp", CSeqDB::eProtein); in BOOST_AUTO_TEST_CASE() 254 CSeqDB db("nr", CSeqDB::eProtein); in BOOST_AUTO_TEST_CASE() 281 CSeqDB db("data/seqp", CSeqDB::eProtein); in BOOST_AUTO_TEST_CASE() 314 CSeqDB db("data/mask-data-db", CSeqDB::eProtein); in BOOST_AUTO_TEST_CASE() [all …]
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/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/algo/blast/proteinkmer/unit_test/ |
H A D | proteinkmer_unit_test.cpp | 97 CRef<CSeqDB> seqdb(new CSeqDB("data/nr_test", CSeqDB::eProtein)); in BOOST_AUTO_TEST_CASE() 160 CRef<CSeqDB> seqdb(new CSeqDB("data/nr_test", CSeqDB::eProtein)); in BOOST_AUTO_TEST_CASE() 237 CRef<CSeqDB> seqdb(new CSeqDB("data/nr_test", CSeqDB::eProtein)); in BOOST_AUTO_TEST_CASE() 536 CRef<CSeqDB> seqdb(new CSeqDB("data/nr_test", CSeqDB::eProtein)); in BOOST_AUTO_TEST_CASE() 592 CRef<CSeqDB> seqdb(new CSeqDB("data/manyXs", CSeqDB::eProtein)); in BOOST_AUTO_TEST_CASE() 612 CRef<CSeqDB> seqdb(new CSeqDB("data/nr_test", CSeqDB::eProtein)); in BOOST_AUTO_TEST_CASE() 641 CRef<CSeqDB> seqdb(new CSeqDB("data/nr_test", CSeqDB::eProtein)); in BOOST_AUTO_TEST_CASE() 670 CRef<CSeqDB> seqdb(new CSeqDB("data/nr_test", CSeqDB::eProtein)); in BOOST_AUTO_TEST_CASE() 701 CRef<CSeqDB> seqdb(new CSeqDB("data/nr_test", CSeqDB::eProtein)); in BOOST_AUTO_TEST_CASE() 798 CRef<CSeqDB> seqdb(new CSeqDB("data/nr_test", CSeqDB::eProtein)); in BOOST_AUTO_TEST_CASE() [all …]
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/blast/proteinkmer/unit_test/ |
H A D | proteinkmer_unit_test.cpp | 97 CRef<CSeqDB> seqdb(new CSeqDB("data/nr_test", CSeqDB::eProtein)); in BOOST_AUTO_TEST_CASE() 160 CRef<CSeqDB> seqdb(new CSeqDB("data/nr_test", CSeqDB::eProtein)); in BOOST_AUTO_TEST_CASE() 237 CRef<CSeqDB> seqdb(new CSeqDB("data/nr_test", CSeqDB::eProtein)); in BOOST_AUTO_TEST_CASE() 536 CRef<CSeqDB> seqdb(new CSeqDB("data/nr_test", CSeqDB::eProtein)); in BOOST_AUTO_TEST_CASE() 592 CRef<CSeqDB> seqdb(new CSeqDB("data/manyXs", CSeqDB::eProtein)); in BOOST_AUTO_TEST_CASE() 612 CRef<CSeqDB> seqdb(new CSeqDB("data/nr_test", CSeqDB::eProtein)); in BOOST_AUTO_TEST_CASE() 641 CRef<CSeqDB> seqdb(new CSeqDB("data/nr_test", CSeqDB::eProtein)); in BOOST_AUTO_TEST_CASE() 670 CRef<CSeqDB> seqdb(new CSeqDB("data/nr_test", CSeqDB::eProtein)); in BOOST_AUTO_TEST_CASE() 701 CRef<CSeqDB> seqdb(new CSeqDB("data/nr_test", CSeqDB::eProtein)); in BOOST_AUTO_TEST_CASE() 798 CRef<CSeqDB> seqdb(new CSeqDB("data/nr_test", CSeqDB::eProtein)); in BOOST_AUTO_TEST_CASE() [all …]
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/blast/seqdb_writer/unit_test/ |
H A D | writedb_unit_test.cpp | 1103 CWriteDB::eProtein, in BOOST_AUTO_TEST_CASE() 1117 CWriteDB::eProtein, in BOOST_AUTO_TEST_CASE() 1180 CWriteDB::eProtein, in BOOST_AUTO_TEST_CASE() 1216 CWriteDB::eProtein, in BOOST_AUTO_TEST_CASE() 1233 CSeqDB db2(nm, CSeqDB::eProtein); in BOOST_AUTO_TEST_CASE() 1269 CWriteDB::eProtein, in BOOST_AUTO_TEST_CASE() 1767 CWriteDB::eProtein, in BOOST_AUTO_TEST_CASE() 2628 CSeqDB db(kDbName, CSeqDB::eProtein); in BOOST_AUTO_TEST_CASE() 2951 CSeqDB seqdb(dbname, CSeqDB::eProtein); in BOOST_AUTO_TEST_CASE() 3010 CSeqDB seqdb(dbname, CSeqDB::eProtein); in BOOST_AUTO_TEST_CASE() [all …]
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/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objtools/blast/seqdb_writer/unit_test/ |
H A D | writedb_unit_test.cpp | 1103 CWriteDB::eProtein, in BOOST_AUTO_TEST_CASE() 1117 CWriteDB::eProtein, in BOOST_AUTO_TEST_CASE() 1180 CWriteDB::eProtein, in BOOST_AUTO_TEST_CASE() 1216 CWriteDB::eProtein, in BOOST_AUTO_TEST_CASE() 1233 CSeqDB db2(nm, CSeqDB::eProtein); in BOOST_AUTO_TEST_CASE() 1269 CWriteDB::eProtein, in BOOST_AUTO_TEST_CASE() 1767 CWriteDB::eProtein, in BOOST_AUTO_TEST_CASE() 2628 CSeqDB db(kDbName, CSeqDB::eProtein); in BOOST_AUTO_TEST_CASE() 2951 CSeqDB seqdb(dbname, CSeqDB::eProtein); in BOOST_AUTO_TEST_CASE() 3010 CSeqDB seqdb(dbname, CSeqDB::eProtein); in BOOST_AUTO_TEST_CASE() [all …]
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/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/algo/blast/unit_tests/blast_mt/ |
H A D | blast_mt_unit_test.cpp | 121 CRef<CSeqDB> seqdb(new CSeqDB(m_db, m_isProtein?CSeqDB::eProtein:CSeqDB::eNucleotide)); in Main() 148 CRef<CSeqDB> seqdb(new CSeqDB(db, isProtein?CSeqDB::eProtein:CSeqDB::eNucleotide)); in s_MTDataLoaderTest() 207 CRef<CSeqDB> seqdb(new CSeqDB(db, isProtein?CSeqDB::eProtein:CSeqDB::eNucleotide)); in s_MTDataLoaderTest2() 256 CRef<CSeqDB> seqdb(new CSeqDB(m_db, m_isProtein?CSeqDB::eProtein:CSeqDB::eNucleotide)); in Main() 274 CRef<CSeqDB> seqdb(new CSeqDB(db, isProtein?CSeqDB::eProtein:CSeqDB::eNucleotide)); in s_MTSeqDBTest() 322 CRef<CSeqDB> seqdb(new CSeqDB(m_db, m_isProtein?CSeqDB::eProtein:CSeqDB::eNucleotide)); in Main() 342 CRef<CSeqDB> seqdb(new CSeqDB(db, isProtein?CSeqDB::eProtein:CSeqDB::eNucleotide)); in s_MTSeqDBTest2() 398 CRef<CSeqDB> seqdb(new CSeqDB(db, isProtein?CSeqDB::eProtein:CSeqDB::eNucleotide)); in s_MTSeqDBTest3()
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/blast/unit_tests/blast_mt/ |
H A D | blast_mt_unit_test.cpp | 121 CRef<CSeqDB> seqdb(new CSeqDB(m_db, m_isProtein?CSeqDB::eProtein:CSeqDB::eNucleotide)); in Main() 148 CRef<CSeqDB> seqdb(new CSeqDB(db, isProtein?CSeqDB::eProtein:CSeqDB::eNucleotide)); in s_MTDataLoaderTest() 207 CRef<CSeqDB> seqdb(new CSeqDB(db, isProtein?CSeqDB::eProtein:CSeqDB::eNucleotide)); in s_MTDataLoaderTest2() 256 CRef<CSeqDB> seqdb(new CSeqDB(m_db, m_isProtein?CSeqDB::eProtein:CSeqDB::eNucleotide)); in Main() 274 CRef<CSeqDB> seqdb(new CSeqDB(db, isProtein?CSeqDB::eProtein:CSeqDB::eNucleotide)); in s_MTSeqDBTest() 322 CRef<CSeqDB> seqdb(new CSeqDB(m_db, m_isProtein?CSeqDB::eProtein:CSeqDB::eNucleotide)); in Main() 342 CRef<CSeqDB> seqdb(new CSeqDB(db, isProtein?CSeqDB::eProtein:CSeqDB::eNucleotide)); in s_MTSeqDBTest2() 398 CRef<CSeqDB> seqdb(new CSeqDB(db, isProtein?CSeqDB::eProtein:CSeqDB::eNucleotide)); in s_MTSeqDBTest3()
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/data_loaders/blastdb/ |
H A D | bdbloader_rmt.cpp | 70 case CRemoteBlastDbDataLoader::eProtein: return "Protein"; in DbTypeToStr() 81 case CRemoteBlastDbDataLoader::eProtein: return CSeqDB::eProtein; in DbTypeToSeqType() 91 case CSeqDB::eProtein: return CRemoteBlastDbDataLoader::eProtein; in SeqTypeToDbType() 337 dbtype = CRemoteBlastDbDataLoader::eProtein; in CreateAndRegister()
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H A D | bdbloader.cpp | 107 case CBlastDbDataLoader::eProtein: return "Protein"; in DbTypeToStr() 118 case CBlastDbDataLoader::eProtein: return CSeqDB::eProtein; in DbTypeToSeqType() 128 case CSeqDB::eProtein: return CBlastDbDataLoader::eProtein; in SeqTypeToDbType() 340 case CBlastDbDataLoader::eProtein: return CSeq_inst::eMol_aa; in GetSequenceType() 353 case CBlastDbDataLoader::eProtein: retval = CSeq_inst::eMol_aa; break; in GetSequenceTypes() 546 dbtype = CBlastDbDataLoader::eProtein; in CreateAndRegister()
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/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objtools/data_loaders/blastdb/ |
H A D | bdbloader_rmt.cpp | 70 case CRemoteBlastDbDataLoader::eProtein: return "Protein"; in DbTypeToStr() 81 case CRemoteBlastDbDataLoader::eProtein: return CSeqDB::eProtein; in DbTypeToSeqType() 91 case CSeqDB::eProtein: return CRemoteBlastDbDataLoader::eProtein; in SeqTypeToDbType() 337 dbtype = CRemoteBlastDbDataLoader::eProtein; in CreateAndRegister()
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H A D | bdbloader.cpp | 107 case CBlastDbDataLoader::eProtein: return "Protein"; in DbTypeToStr() 118 case CBlastDbDataLoader::eProtein: return CSeqDB::eProtein; in DbTypeToSeqType() 128 case CSeqDB::eProtein: return CBlastDbDataLoader::eProtein; in SeqTypeToDbType() 340 case CBlastDbDataLoader::eProtein: return CSeq_inst::eMol_aa; in GetSequenceType() 353 case CBlastDbDataLoader::eProtein: retval = CSeq_inst::eMol_aa; break; in GetSequenceTypes() 546 dbtype = CBlastDbDataLoader::eProtein; in CreateAndRegister()
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/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/algo/blast/blastinput/ |
H A D | blast_scope_src.cpp | 135 ? CBlastDbDataLoader::eProtein in CBlastScopeSource() 147 ? CBlastDbDataLoader::eProtein in CBlastScopeSource() 154 : m_Config(static_cast<bool>(db_handle->GetSequenceType() == CSeqDB::eProtein)) in CBlastScopeSource() 227 db_handle->GetSequenceType() == CSeqDB::eProtein in x_InitBlastDatabaseDataLoader() 228 ? CBlastDbDataLoader::eProtein in x_InitBlastDatabaseDataLoader()
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/blast/blastinput/ |
H A D | blast_scope_src.cpp | 135 ? CBlastDbDataLoader::eProtein in CBlastScopeSource() 147 ? CBlastDbDataLoader::eProtein in CBlastScopeSource() 154 : m_Config(static_cast<bool>(db_handle->GetSequenceType() == CSeqDB::eProtein)) in CBlastScopeSource() 227 db_handle->GetSequenceType() == CSeqDB::eProtein in x_InitBlastDatabaseDataLoader() 228 ? CBlastDbDataLoader::eProtein in x_InitBlastDatabaseDataLoader()
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/app/cn3d/ |
H A D | molecule.hpp | 77 eProtein = ncbi::objects::CBiomol_descr::eMolecule_type_protein, enumerator 115 bool IsProtein(void) const { return (type == eProtein); } in IsProtein() 117 …bool IsBiopolymer(void) const { return (type == eProtein || type == eDNA || type == eRNA || type =… in IsBiopolymer()
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/blast/seqdb_reader/demo/ |
H A D | seqdb_demo.cpp | 80 CSeqDB nr("nr", CSeqDB::eProtein); in Run() 131 CSeqDB sp("swissprot", CSeqDB::eProtein); in Run() 182 CSeqDB sp("swissprot", CSeqDB::eProtein); in Run() 297 sm_is_protein = (db.GetSequenceType() == CSeqDB::eProtein); in Init() 602 if (sp.GetSequenceType() == CSeqDB::eProtein) { in Run() 719 CSeqDB sp("swissprot", CSeqDB::eProtein); in Run()
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/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objtools/blast/seqdb_reader/demo/ |
H A D | seqdb_demo.cpp | 80 CSeqDB nr("nr", CSeqDB::eProtein); in Run() 131 CSeqDB sp("swissprot", CSeqDB::eProtein); in Run() 182 CSeqDB sp("swissprot", CSeqDB::eProtein); in Run() 297 sm_is_protein = (db.GetSequenceType() == CSeqDB::eProtein); in Init() 602 if (sp.GetSequenceType() == CSeqDB::eProtein) { in Run() 719 CSeqDB sp("swissprot", CSeqDB::eProtein); in Run()
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/align_format/unit_test/ |
H A D | showalign_unit_test.cpp | 97 const CBlastDbDataLoader::EDbType kDbType(CBlastDbDataLoader::eProtein); in BOOST_AUTO_TEST_CASE() 103 ds.SetDbType((kDbType == CBlastDbDataLoader::eProtein)); in BOOST_AUTO_TEST_CASE() 130 const CBlastDbDataLoader::EDbType kDbType(CBlastDbDataLoader::eProtein); in BOOST_AUTO_TEST_CASE() 136 ds.SetDbType((kDbType == CBlastDbDataLoader::eProtein)); in BOOST_AUTO_TEST_CASE()
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/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objtools/align_format/unit_test/ |
H A D | showalign_unit_test.cpp | 97 const CBlastDbDataLoader::EDbType kDbType(CBlastDbDataLoader::eProtein); in BOOST_AUTO_TEST_CASE() 103 ds.SetDbType((kDbType == CBlastDbDataLoader::eProtein)); in BOOST_AUTO_TEST_CASE() 130 const CBlastDbDataLoader::EDbType kDbType(CBlastDbDataLoader::eProtein); in BOOST_AUTO_TEST_CASE() 136 ds.SetDbType((kDbType == CBlastDbDataLoader::eProtein)); in BOOST_AUTO_TEST_CASE()
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