Searched refs:eRemoveExons (Results 1 – 7 of 7) sorted by relevance
| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/gnomon/ |
| H A D | aligncollapser.cpp | 389 align.Clip(seg,CGeneModel::eRemoveExons); in ClipNotSupportedFlanks()
409 align.Clip(seg,CGeneModel::eRemoveExons); in ClipNotSupportedFlanks()
440 align.Clip(segr,CGeneModel::eRemoveExons); in ClipNotSupportedFlanks()
445 align.Clip(segl,CGeneModel::eRemoveExons); in ClipNotSupportedFlanks()
471 align.Clip(seg, CGeneModel::eRemoveExons); in ClipNotSupportedFlanks()
474 align.Clip(seg, CGeneModel::eRemoveExons); in ClipNotSupportedFlanks()
525 align.Clip(segr,CGeneModel::eRemoveExons); in RemoveNotSupportedIntronsFromProt()
530 align.Clip(segl,CGeneModel::eRemoveExons); in RemoveNotSupportedIntronsFromProt()
585 a.Clip(new_lim,CGeneModel::eRemoveExons); in RemoveNotSupportedIntronsFromTranscript()
1492 a.Clip(l, CGeneModel::eRemoveExons); in FilterAlignments()
[all …]
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| H A D | gnomon_objmgr.cpp | 363 Clip(newlimits,CAlignModel::eRemoveExons); in CAlignModel()
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| H A D | score.cpp | 402 align.Clip(chunk, CGeneModel::eRemoveExons); in Init()
475 align.Clip(limits, CGeneModel::eRemoveExons); in Init()
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| H A D | gnomon_model.cpp | 803 if (mode == eRemoveExons) in Clip()
859 } else if (mode == eRemoveExons) in Clip()
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| H A D | asn1.cpp | 943 model.Clip(lim,eRemoveExons); // protein alignments doesn't include stop in MakeSeqAlign()
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| H A D | chainer.cpp | 979 a.Clip(a.RealCdsLimits(), CAlignModel::eRemoveExons); in FindAltsForGeneSeeds()
3821 unma.Clip(lim,CGeneModel::eRemoveExons); in CreateChainsForPartialProteins()
6406 editedm.Clip(edited_lim, CGeneModel::eRemoveExons); in FindSelenoproteinsClipProteinsToStartStop()
6455 editedm.Clip(clip, CGeneModel::eRemoveExons); in FindSelenoproteinsClipProteinsToStartStop()
6656 a.Clip(TSignedSeqRange(left,right),CGeneModel::eRemoveExons); in transform_align()
8320 a.Clip(newlimits,CAlignModel::eRemoveExons); in transform_align()
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/algo/gnomon/ |
| H A D | gnomon_model.hpp | 419 enum EClipMode { eRemoveExons, eDontRemoveExons }; enumerator
902 m.Clip(TSignedSeqRange(left,algn.Exons()[i-1].GetTo()),CGeneModel::eRemoveExons); in GetAlignParts()
913 m.Clip(TSignedSeqRange(left,algn.Limits().GetTo()),CGeneModel::eRemoveExons); in GetAlignParts()
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