Searched refs:eReversed (Results 1 – 6 of 6) sorted by relevance
185 Status() ^= eReversed; in ReverseComplementModel()221 Status() |= CGeneModel::eReversed; in CAlignModel()226 Status() &= ~CGeneModel::eReversed; in ResetAlignMap()1415 if((Status()&eReversed) == 0) { in PolyALen()1941 bool reversed = (a.Status()&CGeneModel::eReversed) != 0; in ParseAttributes()2065 if(a.Status()&CGeneModel::eReversed) in printGFF3()2102 if((a.Status() & CGeneModel::eReversed)!=0) { in printGFF3()2146 if((a.Status() & CGeneModel::eReversed)!=0) { in printGFF3()2276 a.Status() |= CGeneModel::eReversed; in readGFF3()2380 if(!(a.Status() & CGeneModel::eReversed)) { in readGFF3()
681 _ASSERT((model.Status()&CGeneModel::eReversed) == 0); // needs to be changed if not true in create_internal_feature()776 …spliced_seg.SetPoly_a((model.Status() & CAlignModel::eReversed)? model.PolyALen() - 1 : model.Targ… in AlignModelToSeqalign()781 …spliced_seg.SetProduct_strand((model.Status() & CGeneModel::eReversed)==0 ? eNa_strand_plus : eNa_… in AlignModelToSeqalign()1106 bool notreversed = (model.Status()&CGeneModel::eReversed) == 0; in RestoreModelReadingFrame()
92 Status() |= CGeneModel::eReversed; in CAlignModel()492 if(Status() & eReversed) in GetCdsDnaSequence()
2145 … 30 && ((align.Status()&CGeneModel::ePolyA) == 0 || (align.Status()&CGeneModel::eReversed) == 0)) { in FillGapsInAlignmentAndAddToGenomicGaps()2152 …-30 && ((align.Status()&CGeneModel::ePolyA) == 0 || (align.Status()&CGeneModel::eReversed) != 0)) { in FillGapsInAlignmentAndAddToGenomicGaps()2299 if(a.Status()&CGeneModel::eReversed) in AddAlignment()
2043 new_algn.Status() &= ~CGeneModel::eReversed; in DuplicateNotOriented()3106 align.Status() &= ~CGeneModel::eReversed; in MakeChains()6608 … || (align.Status()&CGeneModel::eTSA)!=0 || (align.Status()&CGeneModel::eReversed)!=0 || (align.St… in transform_align()7082 aa.Status() &= ~CGeneModel::eReversed; in DropAlignmentInfo()8180 … if((align.Status()&CGeneModel::eReversed) == 0 && caps.find(acc) != caps.end() && fivep < capgap) in transform_align()
375 eReversed = 2, enumerator463 bool notreversed = (Status()&CGeneModel::eReversed) == 0; in Orientation()