Searched refs:eRightConfirmed (Results 1 – 3 of 3) sorted by relevance
1573 if(chain.Status()&CGeneModel::eRightConfirmed) in TrimAlignmentsIncludedInDifferentGenes()3046 if(align.Status()&CGeneModel::eRightConfirmed) { in MakeChains()4618 …if(((Status()&eRightConfirmed) == 0) && (!OpenRightEnd() || ReadingFrame().Empty()) && (Strand() =… in RestoreTrimmedEnds()5003 Status() |= eRightConfirmed; in SetConfirmedEnds()5316 if((Status()&eRightConfirmed) && right_end) in ClipToCap()5366 if((Status()&eRightConfirmed) && right_end) in ClipToPolyA()5559 …ool fivep_confirmed = (Strand() == ePlus) ? (Status()&eLeftConfirmed) : (Status()&eRightConfirmed); in ClipLowCoverageUTR()5589 …bool threep_confirmed = (Strand() == ePlus) ? (Status()&eRightConfirmed) : (Status()&eLeftConfirme… in ClipLowCoverageUTR()5630 …ool fivep_confirmed = (Strand() == ePlus) ? (Status()&eLeftConfirmed) : (Status()&eRightConfirmed); in CalculateDropLimits()5631 …bool threep_confirmed = (Strand() == ePlus) ? (Status()&eRightConfirmed) : (Status()&eLeftConfirme… in CalculateDropLimits()[all …]
1744 if ((a.Status()&CGeneModel::eRightConfirmed)!=0) attributes["flags"] += ",RightConfirmed"; in CollectAttributes()1863 else if (*f == "RightConfirmed") a.Status() |= CGeneModel::eRightConfirmed; in ParseAttributes()
391 eRightConfirmed = 131072, enumerator