| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/gnomon/ |
| H A D | variations.cpp | 263 CGeneModel a(ePlus, 0, CGeneModel::eSR); in GetVariationAlignList()
282 CGeneModel a(ePlus, 0, CGeneModel::eSR); in GetVariationAlignList()
308 CGeneModel a(ePlus, 0, CGeneModel::eSR); in GetVariationAlignList()
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| H A D | aligncollapser.cpp | 57 CGeneModel a(isPlus() ? ePlus : eMinus, 0, isEST() ? CGeneModel::eEST : CGeneModel::eSR); in GetAlignment()
135 if(align.Type()&CGeneModel::eSR) in CAlignCommon()
1998 if((align.Type()&CGeneModel::eSR) && !(align.Status()&CGeneModel::eUnknownOrientation) && in GetCollapsedAlgnments()
2012 …if((align.Type()&CGeneModel::eSR) && (align.Status()&CGeneModel::eUnknownOrientation) && align.Exo… in GetCollapsedAlgnments()
2307 CGeneModel galign(a.Strand(), a.ID(), CGeneModel::eSR); in AddAlignment()
2330 if((a.Type()&CGeneModel::eSR) && !a.Continuous()) // ignore SR with internal gaps in AddAlignment()
2356 if(((align.Type()&CGeneModel::eSR) && !m_filtersr) || in AddAlignment()
2364 if((align.Type()&CGeneModel::eSR) || in AddAlignment()
2384 …if((align.Type()&CGeneModel::eSR) || ((align.Type()&CGeneModel::eEST) && !(align.Status()&CGeneMod… in AddAlignment()
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| H A D | gnomon_model.cpp | 1278 …SetType(Type() | ((CGeneModel::eProt|CGeneModel::eSR|CGeneModel::eEST|CGeneModel::emRNA|CGeneModel… in Extend()
1678 if ((type & (eSR|eEST|emRNA|eNotForChaining))!=0) return "Splign"; in TypeToString()
1728 if ((a.Type() &CGeneModel::eSR)!=0) attributes["flags"] += ",SR"; in CollectAttributes()
1847 else if (*f == "SR") a.SetType(a.Type()| CGeneModel::eSR); in ParseAttributes()
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| H A D | chainer.cpp | 2972 CGeneModel galign(it->Strand(), it->ID(), CGeneModel::eSR); in MakeChains()
2999 CGeneModel galign(it->Strand(), it->ID(), CGeneModel::eSR); in MakeChains()
3068 else if(align.Type() == CGeneModel::eSR) in MakeChains()
3212 if(ip->m_align->Type()&CGeneModel::eSR) in MakeChains()
4220 if(align.Type() == CGeneModel::eSR && overlap.NotEmpty()) { in CChain()
4568 SetType(Type() & (~(eSR | eEST | emRNA | eProt | eNotForChaining))); in CalculateSupportAndWeightFromMembers()
4573 SetType(Type() | (align.Type() & (eSR | eEST | emRNA | eProt | eNotForChaining))); in CalculateSupportAndWeightFromMembers()
5433 if((Type()&CGeneModel::eSR) == 0) // don't have SR coverage in ClipLowCoverageUTR()
5507 … intron_coverage[intron] += (align.Type() == CGeneModel::eSR) ? align.Weight() : 0; in ClipLowCoverageUTR()
5752 if(!(Type()&CGeneModel::eSR)) in SetConsistentCoverage()
[all …]
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| H A D | asn1.cpp | 564 } else if (type&CGeneModel::eSR) { in create_ModelEvidence_user_object()
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/algo/gnomon/ |
| H A D | gnomon_model.hpp | 363 eSR = 4, enumerator
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| /dports/editors/libreoffice/libreoffice-7.2.6.2/sc/source/core/tool/ |
| H A D | token.cxx | 3133 … const ShrinkResult eSR = shrinkRange(rCxt, aAbs, aSelectedRange, rRef); in AdjustReferenceOnShift() local
3134 if (eSR == SHRUNK) in AdjustReferenceOnShift()
3142 else if (eSR == STICKY) in AdjustReferenceOnShift()
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| /dports/editors/libreoffice6/libreoffice-6.4.7.2/sc/source/core/tool/ |
| H A D | token.cxx | 3126 … const ShrinkResult eSR = shrinkRange(rCxt, aAbs, aSelectedRange, rRef); in AdjustReferenceOnShift() local
3127 if (eSR == SHRUNK) in AdjustReferenceOnShift()
3135 else if (eSR == STICKY) in AdjustReferenceOnShift()
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| /dports/www/flexget/Flexget-3.2.18/flexget/tests/cassettes/ |
| H A D | test_imdb.TestImdb.test_year | 715 Xrm0/wkTl7MrO/zLw6OCC5vHn169Si+eSR+6C6t+9p8O3fKF6yM7z7uvt7t22WciDqxTQ5c93Lox
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| /dports/graphics/reallyslick/rss-glx_0.9.1/src/skyrocket_textures/ |
| H A D | earthnearmap | 96 ZH>ƭ��ո�ϳ�ͳ�Ʊ���eSR����������������ʶͺ�����xq��������|�q��|����t��~̳����B90&54#4,#…
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| /dports/biology/bbmap/bbmap/resources/ |
| H A D | blacklist_prokprot_merged.sketch | 30500 1_Pa=eSR
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| H A D | blacklist_refseq_merged.sketch | 126194 :7NS\eSR
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| H A D | blacklist_nt_merged.sketch | 9489 eSR`8fm
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| /dports/graphics/vigra/vigra-8acd73a/vigranumpy/examples/ |
| H A D | VigraGraphs.ipynb | 139 …\niRfM9O1OeGRrWvtIHSKnnruQ4DzXfeIh1p04jIqBRkMapLKqUVGCttKDSuRg1mBNhtYRFx3v/eSR\n3Pa7aTZvnkApRd7Q+N…
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| /dports/devel/godot-tools/godot-demo-projects-8d9d58f112d8/3d/material_testers/backgrounds/ |
| H A D | schelde.hdr | 15412 …��z�zc��e{y�xfi��d�wbbym��vӉ����r{t�j������~�{��؞�������������v����֕�����ȕ�eSR|ʰo��u�ʚn�kl��y�Ϥ��o…
16159 …��v����z����������������o�⺖pW��rr�GOSPEynzNi�]o}�������������nx����~�������eSR`|�������vx���������…
|
| /dports/security/hashcat-legacy/hashcat-legacy-2.00/salts/ |
| H A D | brute-vbulletin.salt | 627621 eSR
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| /dports/www/threejs/three.js-r136/examples/models/ifc/ |
| H A D | rac_advanced_sample_project.ifc | 78377 #132960= IFCRELDEFINESBYPROPERTIES('2eSR$Cyaz2luVCDOkJQoCR',#41,$,$,(#132953),#132956);
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| /dports/math/py-heyoka/heyoka.py-0.16.0/doc/notebooks/ |
| H A D | The Maxwell-Boltzmann distribution.ipynb | 28898 "qyPBDtilDgAAAABwNAowwIk0atTI6ggAgJf0/eSR+uGzUC1q80QfBYVo8eLFVkeKE2bNmKzZLUI0\\\n",
|