| /dports/biology/seqan-apps/seqan-seqan-v2.4.0/tests/align/ |
| H A D | test_alignment_algorithms_dynamic_gap.h | 65 int eScore = 0; in _validateAlignment() local
73 eScore += scoreGapOpen(scoreScheme); in _validateAlignment()
78 eScore += scoreGapExtend(scoreScheme); in _validateAlignment()
86 eScore += scoreGapOpen(scoreScheme); in _validateAlignment()
99 eScore += scoreMatch(scoreScheme); in _validateAlignment()
101 eScore += scoreMismatch(scoreScheme); in _validateAlignment()
118 eScore -= scoreGapOpen(scoreScheme); in _validateAlignment()
134 eScore -= scoreGapOpen(scoreScheme); in _validateAlignment()
150 eScore -= scoreGapOpen(scoreScheme); in _validateAlignment()
166 eScore -= scoreGapOpen(scoreScheme); in _validateAlignment()
[all …]
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| /dports/x11-fonts/fontmatrix/fontmatrix-0.9.100/src/ |
| H A D | fmlayoptwidget.cpp | 45 eScore->setText ( QString::number ( cv ) ); in exChanged()
137 eScore->setText ( QString::number ( value ) ); in setValue()
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| H A D | layoutoptions.ui | 122 <widget class="QLabel" name="eScore" >
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| /dports/biology/mothur/mothur-1.46.1/source/read/ |
| H A D | readblast.cpp | 44 string firstName, secondName, eScore, currentRow; in read() local
67 … >> numBases >> mismatch >> gap >> startQuery >> endQuery >> startRef >> endRef >> eScore >> score; in read()
102 … >> numBases >> mismatch >> gap >> startQuery >> endQuery >> startRef >> endRef >> eScore >> score; in read()
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| /dports/biology/mothur/mothur-1.46.1/source/datastructures/ |
| H A D | optiblastmatrix.cpp | 57 string firstName, secondName, eScore, currentRow; currentRow = ""; in readBlast() local
76 … >> numBases >> mismatch >> gap >> startQuery >> endQuery >> startRef >> endRef >> eScore >> score; in readBlast()
114 … >> numBases >> mismatch >> gap >> startQuery >> endQuery >> startRef >> endRef >> eScore >> score; in readBlast()
290 … >> numBases >> mismatch >> gap >> startQuery >> endQuery >> startRef >> endRef >> eScore >> score; in readBlast()
340 … >> numBases >> mismatch >> gap >> startQuery >> endQuery >> startRef >> endRef >> eScore >> score; in readBlast()
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| H A D | blastdb.cpp | 232 string dummy, eScore; in findClosestMegaBlast() local
237 … >> numBases >> mismatch >> gap >> startQuery >> endQuery >> startRef >> endRef >> eScore >> score; in findClosestMegaBlast()
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/algo/align/prosplign/ |
| H A D | compartments.hpp | 64 eScore enumerator
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/objtools/align_format/ |
| H A D | format_flags.hpp | 112 eScore, ///< Raw score enumerator
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| H A D | align_format_util.hpp | 531 eScore, enumerator
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/include/objtools/align_format/ |
| H A D | format_flags.hpp | 112 eScore, ///< Raw score enumerator
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| H A D | align_format_util.hpp | 531 eScore, enumerator
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/align_format/ |
| H A D | format_flags.cpp | 110 eScore),
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| H A D | tabular.cpp | 758 x_IsFieldRequested(eScore) || in SetFields()
1156 case eScore: in x_PrintFieldNames()
1414 case eScore: in x_PrintField()
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| H A D | showdefline.cpp | 1168 …display_sort,query_buf,CAlignFormatUtil::eHighestScore,CAlignFormatUtil::eScore,kMaxScore,m_MaxSco… in x_DisplayDeflineTable()
1170 …t,display_sort,query_buf,CAlignFormatUtil::eTotalScore,CAlignFormatUtil::eScore,kTotalScore,m_MaxT… in x_DisplayDeflineTable()
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| H A D | showalign.cpp | 3415 if (hsp_sort != CAlignFormatUtil::eScore) { in x_DisplayAlignSortInfo()
3418 << CAlignFormatUtil::eScore in x_DisplayAlignSortInfo()
3423 if (hsp_sort != CAlignFormatUtil::eScore) { in x_DisplayAlignSortInfo()
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| H A D | align_format_util.cpp | 2948 } else if (hsp_sort == eScore) { in SortOneSeqalignForSortableFormat()
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objtools/align_format/ |
| H A D | format_flags.cpp | 110 eScore),
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| H A D | tabular.cpp | 758 x_IsFieldRequested(eScore) || in SetFields()
1156 case eScore: in x_PrintFieldNames()
1414 case eScore: in x_PrintField()
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| H A D | showdefline.cpp | 1168 …display_sort,query_buf,CAlignFormatUtil::eHighestScore,CAlignFormatUtil::eScore,kMaxScore,m_MaxSco… in x_DisplayDeflineTable()
1170 …t,display_sort,query_buf,CAlignFormatUtil::eTotalScore,CAlignFormatUtil::eScore,kTotalScore,m_MaxT… in x_DisplayDeflineTable()
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| H A D | showalign.cpp | 3415 if (hsp_sort != CAlignFormatUtil::eScore) { in x_DisplayAlignSortInfo()
3418 << CAlignFormatUtil::eScore in x_DisplayAlignSortInfo()
3423 if (hsp_sort != CAlignFormatUtil::eScore) { in x_DisplayAlignSortInfo()
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| H A D | align_format_util.cpp | 2947 } else if (hsp_sort == eScore) { in SortOneSeqalignForSortableFormat()
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/align/prosplign/ |
| H A D | compartments.cpp | 272 else if (compart_options.m_Maximizing == CCompartOptions::eScore) in CreateCompartmentAccessor()
508 … s_scoreNames[eCoverage], s_scoreNames[eIdentity], s_scoreNames[eScore])); in SetupArgDescriptions()
|