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Searched refs:eUnknownOrientation (Results 1 – 6 of 6) sorted by relevance

/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/gnomon/
H A Daligncollapser.cpp63 a.Status()|= CGeneModel::eUnknownOrientation; in GetAlignment()
144 if(align.Status()&CGeneModel::eUnknownOrientation) { in CAlignCommon()
855 if(!(align.Status()&CGeneModel::eUnknownOrientation)) { in CleanSelfTranscript()
890 if(!(align.Status()&CGeneModel::eUnknownOrientation)) { in CleanSelfTranscript()
1373 if(align.Status()&CGeneModel::eUnknownOrientation) { in FilterAlignments()
1592 … if((align.Status()&CGeneModel::eUnknownOrientation) || align.Strand() == ePlus) { in FilterAlignments()
1998 if((align.Type()&CGeneModel::eSR) && !(align.Status()&CGeneModel::eUnknownOrientation) && in GetCollapsedAlgnments()
2023 align.Status() -= CGeneModel::eUnknownOrientation; in GetCollapsedAlgnments()
2081 …t.Strand() || (host.Status()&CGeneModel::eUnknownOrientation) != (guest.Status()&CGeneModel::eUnkn… in GetCollapsedAlgnments()
2294 if(a.Status()&CGeneModel::eUnknownOrientation) in AddAlignment()
[all …]
H A Dgnomon_model.cpp975 … a.Strand() || ((a.Status()&CGeneModel::eUnknownOrientation) != 0 && (b.Status()&CGeneModel::eUnkn… in isCompatible()
1738 …if ((a.Status()&CGeneModel::eUnknownOrientation)!=0) attributes["flags"] += ",UnknownOrientatio… in CollectAttributes()
1858 else if (*f == "UnknownOrientation") a.Status()|= CGeneModel::eUnknownOrientation; in ParseAttributes()
2323 _ASSERT((a.Status()&CGeneModel::eUnknownOrientation) == 0); in readGFF3()
H A Dgnomon_objmgr.cpp462 Status() |= CGeneModel::eUnknownOrientation; in CAlignModel()
H A Dchainer.cpp2040 if((algn.Status()&CGeneModel::eUnknownOrientation) != 0) { in DuplicateNotOriented()
2425 if(ai.Status()&CGeneModel::eUnknownOrientation) { in FindContainedAlignments()
3057 if((align.Status()&CGeneModel::eUnknownOrientation) == 0) { in MakeChains()
3085 if(align.Status()&CGeneModel::eUnknownOrientation) { in MakeChains()
3098 align.Status() ^= CGeneModel::eUnknownOrientation; in MakeChains()
3102 align.Status() ^= CGeneModel::eUnknownOrientation; in MakeChains()
6608 …| (align.Status()&CGeneModel::eReversed)!=0 || (align.Status()&CGeneModel::eUnknownOrientation)!=0) in transform_align()
6863 if ((align.Status()&CGeneModel::eUnknownOrientation) != 0 || align.PolyALen() < minpolya) in transform_align()
H A Dasn1.cpp962 if(Status()&eUnknownOrientation) in MakeSeqAlign()
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/algo/gnomon/
H A Dgnomon_model.hpp384 eUnknownOrientation = 1024, enumerator