Searched refs:ecDNAIntrons (Results 1 – 3 of 3) sorted by relevance
374 ecDNAIntrons = 1, enumerator
1740 if ((a.Status()&CGeneModel::ecDNAIntrons)!=0) attributes["flags"] += ",cDNAIntrons"; in CollectAttributes()1860 else if (*f == "cDNAIntrons") a.Status() |= CGeneModel::ecDNAIntrons; in ParseAttributes()
443 …if(a.Exons().size() > 1 && (a.Status()&CGeneModel::ecDNAIntrons) == 0 && a.TrustedmRNA().empty() &… in IsAllowedAlternative()615 if((a.Status()&CGeneModel::ecDNAIntrons) != 0) in DescendingModelOrder()626 if((b.Status()&CGeneModel::ecDNAIntrons) != 0) in DescendingModelOrder()793 …eModel::eBestPlacement && (algn.Exons().size() == 1 || (algn.Status()&CGeneModel::ecDNAIntrons))) { in CheckCompatibility()890 …if(!good_model || included_in.size() != 1 || (!(algn.Status()&CGeneModel::ecDNAIntrons) && algn.Tr… in ReplacePseudoGeneSeeds()4005 chain.Status() |= CGeneModel::ecDNAIntrons; in SetFlagsForChains()