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Searched refs:edgesInOrder (Results 1 – 2 of 2) sorted by relevance

/dports/biology/gatk/gatk-4.2.0.0/src/main/java/org/broadinstitute/hellbender/tools/walkers/haplotypecaller/graphs/
H A DPath.java29 private final List<E> edgesInOrder; field in Path
44 edgesInOrder = new ArrayList<>(0); in Path()
53 this.edgesInOrder = edgesInOrder; in Path()
74 edgesInOrder.addAll(p.edgesInOrder); in Path()
75 edgesInOrder.add(edge); in Path()
103 edgesInOrder.addAll(p.edgesInOrder); in Path()
104 edgesInOrder.addAll(edges); in Path()
113 return edgesInOrder.size(); in length()
133 edgesInOrder.add(edge); in Path()
139 return edgesInOrder.equals(path.edgesInOrder); in pathsAreTheSame()
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/dports/biology/gatk/gatk-4.2.0.0/src/test/java/org/broadinstitute/hellbender/tools/walkers/haplotypecaller/graphs/
H A DJunctionTreeKBestHaplotypeFinderUnitTest.java1223 Iterator<MultiSampleEdge> edgesInOrder = pivotalEdges.iterator(); in testCreateMapOfPivotalEdgesInTopoglogicalOrderBasicExample() local
1228 while (edgesInOrder.hasNext()) { in testCreateMapOfPivotalEdgesInTopoglogicalOrderBasicExample()
1229 MultiSampleEdge nextEdge = edgesInOrder.next(); in testCreateMapOfPivotalEdgesInTopoglogicalOrderBasicExample()
1262 Iterator<MultiSampleEdge> edgesInOrder = pivotalEdges.iterator(); in testCreateMapOfPivotalEdgesInTopoglogicalOrderHiddenReferenceSequence() local
1271 while (edgesInOrder.hasNext()) { in testCreateMapOfPivotalEdgesInTopoglogicalOrderHiddenReferenceSequence()
1272 MultiSampleEdge nextEdge = edgesInOrder.next(); in testCreateMapOfPivotalEdgesInTopoglogicalOrderHiddenReferenceSequence()