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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/gnomon/
H A Dhmm_inlines.hpp57 m_next[enG].Init((*i++)->GetPrev_order()); in Init()
61 m_next[enN].Average(m_next[enA],m_next[enC],m_next[enG],m_next[enT]); in Init()
68 m_next[enG].Average(mc0.m_next[enG],mc1.m_next[enG],mc2.m_next[enG],mc3.m_next[enG]); in Average()
70 m_next[enN].Average(m_next[enA],m_next[enC],m_next[enG],m_next[enT]); in Average()
77 m_next[enG].toScore(); in toScore()
110 if(seq[i+1] != enG || (seq[i+2] != enT && seq[i+2] != enC)) return BadScore(); // no GT/GC in Score()
135 if(seq[i-1] != enA || seq[i] != enG) return BadScore(); // no AG in Score()
H A Dhmm.cpp406 m_score[enG] = (*i++)->GetValue(); in Init()
410 m_score[enN] = 0.25*(m_score[enA]+m_score[enC]+m_score[enG]+m_score[enT]); in Init()
417 m_score[enG] = 0.25*(mc0.m_score[enG]+mc1.m_score[enG]+mc2.m_score[enG]+mc3.m_score[enG]); in Average()
419 m_score[enN] = 0.25*(m_score[enA]+m_score[enC]+m_score[enG]+m_score[enT]); in Average()
426 m_score[enG] = (m_score[enG] <= 0) ? BadScore() : log(4*m_score[enG]); in toScore()
449 if(seq[i-2] != enA || seq[i-1] != enT || seq[i] != enG) return BadScore(); // no ATG in Score()
471 (seq[i+1] != enT || seq[i+2] != enA || seq[i+3] != enG) && in Score()
472 (seq[i+1] != enT || seq[i+2] != enG || seq[i+3] != enA)) return BadScore(); // no stop-codon in Score()
H A Dgnomon_seq.hpp73 return enG; in fromACGT()
90 case enG: in toACGT()
H A Dscore.cpp49 else if(ss[ii] != enA || ss[ii+1] != enT || ss[ii+2] != enG) return false; in BEGIN_SCOPE()
59 (ss[ii] != enT || ss[ii+1] != enA || ss[ii+2] != enG) && in isStop()
60 (ss[ii] != enT || ss[ii+1] != enG || ss[ii+2] != enA)) return false; in isStop()
87 if(ss[ii-1] != enA || ss[ii] != enG) return false; in isAG()
96 if(ss[ii] != enG || ss[ii+1] != enT) return false; in isGT()
1123 if(s[i+1] == enA && s[i+2] == enG) m_asplit[strand][0][i] |= stpT; in Init()
1124 if(s[i+1] == enG && s[i+2] == enA) m_asplit[strand][0][i] |= stpT; in Init()
1126 if(s[i+1] == enG) m_asplit[strand][1][i] |= stpTA; in Init()
1131 if(s[i-1] == enT && s[i] == enG) m_dsplit[strand][1][i] |= stpTG; in Init()
1142 if(s[ii+1] == enG) m_asplit[strand][1][i] |= stpTA; in Init()
[all …]
H A Dgnomon_seq.cpp39 const EResidue k_toMinus[5] = { enT, enG, enC, enA, enN };
77 static const EResidue s_ecodons0 [3] = { enA, enT, enG };
79 static const EResidue s_ecodons2 [3] = { enT, enA, enG };
80 static const EResidue s_ecodons3 [3] = { enT, enG, enA };
H A Dgnomon_engine.cpp120 if (c == enC || c == enG) { in ResetRange()
/dports/www/phpgroupware/phpgroupware-0.9.16.017/addressbook/setup/
H A Dphpgw_tr.lang79 forced preferences addressbook enG��lendirilmi� tercihler
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/algo/gnomon/
H A Dgnomon_model.hpp839 enum EResidueNames { enA, enC, enG, enT, enN }; enumerator
/dports/math/py-heyoka/heyoka.py-0.16.0/doc/notebooks/
H A DThe Keplerian billiard.ipynb125024 "kOnTp5uOIB7i4Ycf1j6Fbqx6zVr8oQ2YKergzdFTNG/enG+//ZYTJ06QJ08eAFq3bk2hQoXo378/\\\n",
140321 "9Ekovnbv3k2RIkXYvXu3Uds7OTnRqFEjKb5EkiQFmFDu2rVrNG/enG+//Va6HgqLi4uLY8uWLfTt\\\n",
157562 "gjAyKcBEoowfP151BJMwGAzs27cPgMqVK9OsWTO1gcQ7NW/enG+++Yb8+fOrjiKEValUqRIFCxZU\\\n",
/dports/security/hashcat-legacy/hashcat-legacy-2.00/salts/
H A Dbrute-vbulletin.salt630175 enG