Searched refs:entry_program_name (Results 1 – 6 of 6) sorted by relevance
335 global_context->config.entry_program_name = CORE_PROGRAM_SUBINDEL; in main()
211 int entry_program_name; member
268 global_context->config.entry_program_name = CORE_PROGRAM_SUBREAD; in parse_opts_aligner()
263 global_context->config.entry_program_name = CORE_PROGRAM_SUBJUNC; in parse_opts_subjunc()
375 …if(global_context->config.entry_program_name == CORE_PROGRAM_SUBJUNC && ( global_context -> config… in show_summary()427 …if(global_context->config.entry_program_name == CORE_PROGRAM_SUBJUNC && ( global_context -> config… in show_summary()459 …if(global_context->config.entry_program_name == CORE_PROGRAM_SUBJUNC && ( global_context -> config… in show_summary()1221 …if(context -> config.entry_program_name == CORE_PROGRAM_SUBJUNC && (context -> config.prefer_donor…3749 …print_in_box(80, 1, 1, context->config.entry_program_name == CORE_PROGRAM_SUBJUNC?"setting":"setti…
4013 …config.entry_program_name == CORE_PROGRAM_SUBJUNC && global_context -> config.do_fusion_detection… in find_new_junctions()4151 …-> event_type != CHRO_EVENT_TYPE_FUSION && (global_context->config.entry_program_name != CORE_PROG… in write_fusion_final_results()