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Searched refs:epi_ip (Results 1 – 3 of 3) sorted by relevance

/dports/biology/plink/plink-ng-79b2df8c/1.9/
H A Dplink_ld.h128 void ld_epi_init(Ld_info* ldip, Epi_info* epi_ip, Clump_info* clump_ip);
130 void ld_epi_cleanup(Ld_info* ldip, Epi_info* epi_ip, Clump_info* clump_ip);
142 int32_t twolocus(Epi_info* epi_ip, FILE* bedfile, uintptr_t bed_offset, uintptr_t marker_ct, uintpt…
144 int32_t epistasis_report(pthread_t* threads, Epi_info* epi_ip, FILE* bedfile, uintptr_t bed_offset,…
148 int32_t epi_summary_merge(Epi_info* epi_ip, char* outname, char* outname_end);
H A Dplink_ld.c54 epi_ip->modifier = 0; in ld_epi_init()
56 epi_ip->epi1 = 0.0; in ld_epi_init()
57 epi_ip->epi2 = 0.01; in ld_epi_init()
58 epi_ip->je_cellmin = 5; in ld_epi_init()
59 epi_ip->ld_mkr1 = nullptr; in ld_epi_init()
60 epi_ip->ld_mkr2 = nullptr; in ld_epi_init()
82 free_cond(epi_ip->ld_mkr1); in ld_epi_cleanup()
83 free_cond(epi_ip->ld_mkr2); in ld_epi_cleanup()
7889 char* mkr1 = outname? epi_ip->twolocus_mkr1 : epi_ip->ld_mkr1; in twolocus()
7890 char* mkr2 = outname? epi_ip->twolocus_mkr2 : epi_ip->ld_mkr2; in twolocus()
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H A Dplink.c322 …ighbor_n1, uint32_t neighbor_n2, Set_info* sip, Ld_info* ldip, Epi_info* epi_ip, Clump_info* clump… in plink() argument
344 …_map_fname, sip->fname, min_bp_space, genome_skip_write, ldip->modifier, epi_ip->modifier, cluster… in plink()
713 } else if ((calculation_type & CALC_EPI) && (epi_ip->modifier & EPI_FAST)) { in plink()
1181 …c != 0.0) || (!read_dists_fname))) || ((calculation_type & CALC_EPI) && (epi_ip->modifier & (EPI_F… in plink()
1639 if ((calculation_type & CALC_EPI) && epi_ip->twolocus_mkr1) { in plink()
1640 …retval = twolocus(epi_ip, bedfile, bed_offset, marker_ct, unfiltered_marker_ct, marker_exclude, ma… in plink()
1705 if ((calculation_type & CALC_EPI) && epi_ip->ld_mkr1) { in plink()
1706 …retval = twolocus(epi_ip, bedfile, bed_offset, marker_ct, unfiltered_marker_ct, marker_exclude, ma… in plink()
1883 if ((calculation_type & CALC_EPI) && (epi_ip->modifier & (EPI_FAST | EPI_REG))) { in plink()
1884 if ((map_is_unsorted & UNSORTED_BP) && (epi_ip->modifier & EPI_FAST_CASE_ONLY)) { in plink()
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